Gene : SNL5 A. thaliana TAIR10
Primary Identifier:  ? AT1G59890 Defline:  (1 of 6) K11644 - paired amphipathic helix protein Sin3a (SIN3A)
Genomic Order:  4891 Name:  ? AT1G59890
Secondary Identifier:  ? PAC:19653162
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G59890 0.5kb upstream 0.5kb upstream 7758 true Chr1: 22043329-22051086 Arabidopsis thaliana
AT1G59890 0.5kb upstream 0.5kb upstream 500 false Chr1: 22043329-22043828 Arabidopsis thaliana
AT1G59890 0.5kb downstream 0.5kb downstream 7758 true Chr1: 22043829-22051586 Arabidopsis thaliana
AT1G59890 0.5kb downstream 0.5kb downstream 500 false Chr1: 22051087-22051586 Arabidopsis thaliana
AT1G59890 1.0kb upstream 1.0kb upstream 8258 true Chr1: 22042829-22051086 Arabidopsis thaliana
AT1G59890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22042829-22043828 Arabidopsis thaliana
AT1G59890 1.0kb downstream 1.0kb downstream 8258 true Chr1: 22043829-22052086 Arabidopsis thaliana
AT1G59890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22051087-22052086 Arabidopsis thaliana
AT1G59890 2.0kb upstream 2.0kb upstream 9258 true Chr1: 22041829-22051086 Arabidopsis thaliana
AT1G59890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22041829-22043828 Arabidopsis thaliana
AT1G59890 2.0kb downstream 2.0kb downstream 9258 true Chr1: 22043829-22053086 Arabidopsis thaliana
AT1G59890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22051087-22053086 Arabidopsis thaliana
AT1G59890 5.0kb upstream 5.0kb upstream 12258 true Chr1: 22038829-22051086 Arabidopsis thaliana
AT1G59890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22038829-22043828 Arabidopsis thaliana
AT1G59890 5.0kb downstream 5.0kb downstream 12258 true Chr1: 22043829-22056086 Arabidopsis thaliana
AT1G59890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22051087-22056086 Arabidopsis thaliana
AT1G59890 10.0kb upstream 10.0kb upstream 17258 true Chr1: 22033829-22051086 Arabidopsis thaliana
AT1G59890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22033829-22043828 Arabidopsis thaliana
AT1G59890 10.0kb downstream 10.0kb downstream 17258 true Chr1: 22043829-22061086 Arabidopsis thaliana
AT1G59890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22051087-22061086 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510538 5273 Angiosperm View MSA
122365217 5261 Brassicaceae View MSA
123798914 5264 Brassicales-Malvales View MSA
124296488 5266 SBM View MSA
124148624 5268 Malvidae View MSA
123874584 5270 Rosid View MSA
123458533 5271 Pentapetalae View MSA
122493938 5272 Eudicot View MSA
120783632 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.738        
cufflinks 2.366        
cufflinks 1.421       Low
cufflinks 2.607       High
cufflinks 1.486       Low
cufflinks 2.506        

0 Strain