Gene : CRT1a A. thaliana TAIR10
Primary Identifier:  ? AT1G56340 Defline:  (1 of 1) PTHR11073//PTHR11073:SF17 - CALRETICULIN AND CALNEXIN // SUBFAMILY NOT NAMED
Genomic Order:  4698 Name:  ? AT1G56340
Secondary Identifier:  ? PAC:19654346
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G56340 0.5kb upstream 0.5kb upstream 3317 true Chr1: 21089844-21093160 Arabidopsis thaliana
AT1G56340 0.5kb upstream 0.5kb upstream 500 false Chr1: 21092661-21093160 Arabidopsis thaliana
AT1G56340 0.5kb downstream 0.5kb downstream 3317 true Chr1: 21089344-21092660 Arabidopsis thaliana
AT1G56340 0.5kb downstream 0.5kb downstream 500 false Chr1: 21089344-21089843 Arabidopsis thaliana
AT1G56340 1.0kb upstream 1.0kb upstream 3817 true Chr1: 21089844-21093660 Arabidopsis thaliana
AT1G56340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21092661-21093660 Arabidopsis thaliana
AT1G56340 1.0kb downstream 1.0kb downstream 3817 true Chr1: 21088844-21092660 Arabidopsis thaliana
AT1G56340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21088844-21089843 Arabidopsis thaliana
AT1G56340 2.0kb upstream 2.0kb upstream 4817 true Chr1: 21089844-21094660 Arabidopsis thaliana
AT1G56340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21092661-21094660 Arabidopsis thaliana
AT1G56340 2.0kb downstream 2.0kb downstream 4817 true Chr1: 21087844-21092660 Arabidopsis thaliana
AT1G56340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21087844-21089843 Arabidopsis thaliana
AT1G56340 5.0kb upstream 5.0kb upstream 7817 true Chr1: 21089844-21097660 Arabidopsis thaliana
AT1G56340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21092661-21097660 Arabidopsis thaliana
AT1G56340 5.0kb downstream 5.0kb downstream 7817 true Chr1: 21084844-21092660 Arabidopsis thaliana
AT1G56340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21084844-21089843 Arabidopsis thaliana
AT1G56340 10.0kb upstream 10.0kb upstream 12817 true Chr1: 21089844-21102660 Arabidopsis thaliana
AT1G56340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21092661-21102660 Arabidopsis thaliana
AT1G56340 10.0kb downstream 10.0kb downstream 12817 true Chr1: 21079844-21092660 Arabidopsis thaliana
AT1G56340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21079844-21089843 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379071 5261 Brassicaceae View MSA
123837114 5264 Brassicales-Malvales View MSA
124343526 5266 SBM View MSA
124240148 5268 Malvidae View MSA
124065619 5270 Rosid View MSA
123752125 5271 Pentapetalae View MSA
122787477 5272 Eudicot View MSA
122050061 5273 Angiosperm View MSA
121351092 5274 Embryophyte View MSA
123428269 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 63.6     High  
cufflinks 48.131     High  
cufflinks 31.745     High Low
cufflinks 58.819     High  
cufflinks 37.103     High  
cufflinks 65.76     High  

0 Strain