Gene : CSLE1 A. thaliana TAIR10
Primary Identifier:  ? AT1G55850 Defline:  (1 of 1) PTHR13301//PTHR13301:SF60 - X-BOX TRANSCRIPTION FACTOR-RELATED // CELLULOSE SYNTHASE-LIKE PROTEIN E1
Genomic Order:  4643 Name:  ? AT1G55850
Secondary Identifier:  ? PAC:19652964
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1001 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55850 0.5kb upstream 0.5kb upstream 3284 true Chr1: 20876199-20879482 Arabidopsis thaliana
AT1G55850 0.5kb upstream 0.5kb upstream 500 false Chr1: 20876199-20876698 Arabidopsis thaliana
AT1G55850 0.5kb downstream 0.5kb downstream 3284 true Chr1: 20876699-20879982 Arabidopsis thaliana
AT1G55850 0.5kb downstream 0.5kb downstream 500 false Chr1: 20879483-20879982 Arabidopsis thaliana
AT1G55850 1.0kb upstream 1.0kb upstream 3784 true Chr1: 20875699-20879482 Arabidopsis thaliana
AT1G55850 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20875699-20876698 Arabidopsis thaliana
AT1G55850 1.0kb downstream 1.0kb downstream 3784 true Chr1: 20876699-20880482 Arabidopsis thaliana
AT1G55850 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20879483-20880482 Arabidopsis thaliana
AT1G55850 2.0kb upstream 2.0kb upstream 4784 true Chr1: 20874699-20879482 Arabidopsis thaliana
AT1G55850 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20874699-20876698 Arabidopsis thaliana
AT1G55850 2.0kb downstream 2.0kb downstream 4784 true Chr1: 20876699-20881482 Arabidopsis thaliana
AT1G55850 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20879483-20881482 Arabidopsis thaliana
AT1G55850 5.0kb upstream 5.0kb upstream 7784 true Chr1: 20871699-20879482 Arabidopsis thaliana
AT1G55850 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20871699-20876698 Arabidopsis thaliana
AT1G55850 5.0kb downstream 5.0kb downstream 7784 true Chr1: 20876699-20884482 Arabidopsis thaliana
AT1G55850 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20879483-20884482 Arabidopsis thaliana
AT1G55850 10.0kb upstream 10.0kb upstream 12784 true Chr1: 20866699-20879482 Arabidopsis thaliana
AT1G55850 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20866699-20876698 Arabidopsis thaliana
AT1G55850 10.0kb downstream 10.0kb downstream 12784 true Chr1: 20876699-20889482 Arabidopsis thaliana
AT1G55850 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20879483-20889482 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371179 5261 Brassicaceae View MSA
123830596 5264 Brassicales-Malvales View MSA
124339465 5266 SBM View MSA
124237130 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.257       High
cufflinks 4.153        
cufflinks 17.36        
cufflinks 10.731        
cufflinks 23.177        
cufflinks 2.506       Low

0 Strain