Gene : AT1G55700 A. thaliana TAIR10
Defline:  (1 of 126) PTHR32410//PTHR32410:SF152 - FAMILY NOT NAMED // C1 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4628
Name:  ? AT1G55700 Secondary Identifier:  ? PAC:19649529
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55700 0.5kb upstream 0.5kb upstream 2540 true Chr1: 20821101-20823640 Arabidopsis thaliana
AT1G55700 0.5kb upstream 0.5kb upstream 500 false Chr1: 20821101-20821600 Arabidopsis thaliana
AT1G55700 0.5kb downstream 0.5kb downstream 2540 true Chr1: 20821601-20824140 Arabidopsis thaliana
AT1G55700 0.5kb downstream 0.5kb downstream 500 false Chr1: 20823641-20824140 Arabidopsis thaliana
AT1G55700 1.0kb upstream 1.0kb upstream 3040 true Chr1: 20820601-20823640 Arabidopsis thaliana
AT1G55700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20820601-20821600 Arabidopsis thaliana
AT1G55700 1.0kb downstream 1.0kb downstream 3040 true Chr1: 20821601-20824640 Arabidopsis thaliana
AT1G55700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20823641-20824640 Arabidopsis thaliana
AT1G55700 2.0kb upstream 2.0kb upstream 4040 true Chr1: 20819601-20823640 Arabidopsis thaliana
AT1G55700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20819601-20821600 Arabidopsis thaliana
AT1G55700 2.0kb downstream 2.0kb downstream 4040 true Chr1: 20821601-20825640 Arabidopsis thaliana
AT1G55700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20823641-20825640 Arabidopsis thaliana
AT1G55700 5.0kb upstream 5.0kb upstream 7040 true Chr1: 20816601-20823640 Arabidopsis thaliana
AT1G55700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20816601-20821600 Arabidopsis thaliana
AT1G55700 5.0kb downstream 5.0kb downstream 7040 true Chr1: 20821601-20828640 Arabidopsis thaliana
AT1G55700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20823641-20828640 Arabidopsis thaliana
AT1G55700 10.0kb upstream 10.0kb upstream 12040 true Chr1: 20811601-20823640 Arabidopsis thaliana
AT1G55700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20811601-20821600 Arabidopsis thaliana
AT1G55700 10.0kb downstream 10.0kb downstream 12040 true Chr1: 20821601-20833640 Arabidopsis thaliana
AT1G55700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20823641-20833640 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381688 5261 Brassicaceae View MSA
123803377 5264 Brassicales-Malvales View MSA
124300491 5266 SBM View MSA
124151667 5268 Malvidae View MSA
124070692 5270 Rosid View MSA
123751823 5271 Pentapetalae View MSA
122797568 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low Low
cufflinks 0.097     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.444        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.332     Low  

0 Strain