Gene : CAX5 A. thaliana TAIR10
Primary Identifier:  ? AT1G55730 Defline:  (1 of 5) K07300 - Ca2+:H+ antiporter (chaA, CAX)
Genomic Order:  4631 Name:  ? AT1G55730
Secondary Identifier:  ? PAC:19649626
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55730 0.5kb upstream 0.5kb upstream 3968 true Chr1: 20831052-20835019 Arabidopsis thaliana
AT1G55730 0.5kb upstream 0.5kb upstream 500 false Chr1: 20834520-20835019 Arabidopsis thaliana
AT1G55730 0.5kb downstream 0.5kb downstream 3968 true Chr1: 20830552-20834519 Arabidopsis thaliana
AT1G55730 0.5kb downstream 0.5kb downstream 500 false Chr1: 20830552-20831051 Arabidopsis thaliana
AT1G55730 1.0kb upstream 1.0kb upstream 4468 true Chr1: 20831052-20835519 Arabidopsis thaliana
AT1G55730 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20834520-20835519 Arabidopsis thaliana
AT1G55730 1.0kb downstream 1.0kb downstream 4468 true Chr1: 20830052-20834519 Arabidopsis thaliana
AT1G55730 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20830052-20831051 Arabidopsis thaliana
AT1G55730 2.0kb upstream 2.0kb upstream 5468 true Chr1: 20831052-20836519 Arabidopsis thaliana
AT1G55730 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20834520-20836519 Arabidopsis thaliana
AT1G55730 2.0kb downstream 2.0kb downstream 5468 true Chr1: 20829052-20834519 Arabidopsis thaliana
AT1G55730 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20829052-20831051 Arabidopsis thaliana
AT1G55730 5.0kb upstream 5.0kb upstream 8468 true Chr1: 20831052-20839519 Arabidopsis thaliana
AT1G55730 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20834520-20839519 Arabidopsis thaliana
AT1G55730 5.0kb downstream 5.0kb downstream 8468 true Chr1: 20826052-20834519 Arabidopsis thaliana
AT1G55730 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20826052-20831051 Arabidopsis thaliana
AT1G55730 10.0kb upstream 10.0kb upstream 13468 true Chr1: 20831052-20844519 Arabidopsis thaliana
AT1G55730 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20834520-20844519 Arabidopsis thaliana
AT1G55730 10.0kb downstream 10.0kb downstream 13468 true Chr1: 20821052-20834519 Arabidopsis thaliana
AT1G55730 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20821052-20831051 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377115 5261 Brassicaceae View MSA
123801446 5264 Brassicales-Malvales View MSA
124348373 5266 SBM View MSA
124251400 5268 Malvidae View MSA
124071439 5270 Rosid View MSA
123747660 5271 Pentapetalae View MSA
122792881 5272 Eudicot View MSA
122045212 5273 Angiosperm View MSA
121347037 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.229        
cufflinks 4.216        
cufflinks 2.143       Low
cufflinks 4.885       High
cufflinks 2.872        
cufflinks 4.386        

0 Strain