Gene : AT1G55820 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12758//PTHR12758:SF13 - APOPTOSIS INHIBITOR 5-RELATED // GBF-INTERACTING PROTEIN 1 Genomic Order:  4640
Name:  ? AT1G55820 Secondary Identifier:  ? PAC:19652350
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55820 0.5kb upstream 0.5kb upstream 3773 true Chr1: 20863839-20867611 Arabidopsis thaliana
AT1G55820 0.5kb upstream 0.5kb upstream 500 false Chr1: 20863839-20864338 Arabidopsis thaliana
AT1G55820 0.5kb downstream 0.5kb downstream 3773 true Chr1: 20864339-20868111 Arabidopsis thaliana
AT1G55820 0.5kb downstream 0.5kb downstream 500 false Chr1: 20867612-20868111 Arabidopsis thaliana
AT1G55820 1.0kb upstream 1.0kb upstream 4273 true Chr1: 20863339-20867611 Arabidopsis thaliana
AT1G55820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20863339-20864338 Arabidopsis thaliana
AT1G55820 1.0kb downstream 1.0kb downstream 4273 true Chr1: 20864339-20868611 Arabidopsis thaliana
AT1G55820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20867612-20868611 Arabidopsis thaliana
AT1G55820 2.0kb upstream 2.0kb upstream 5273 true Chr1: 20862339-20867611 Arabidopsis thaliana
AT1G55820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20862339-20864338 Arabidopsis thaliana
AT1G55820 2.0kb downstream 2.0kb downstream 5273 true Chr1: 20864339-20869611 Arabidopsis thaliana
AT1G55820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20867612-20869611 Arabidopsis thaliana
AT1G55820 5.0kb upstream 5.0kb upstream 8273 true Chr1: 20859339-20867611 Arabidopsis thaliana
AT1G55820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20859339-20864338 Arabidopsis thaliana
AT1G55820 5.0kb downstream 5.0kb downstream 8273 true Chr1: 20864339-20872611 Arabidopsis thaliana
AT1G55820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20867612-20872611 Arabidopsis thaliana
AT1G55820 10.0kb upstream 10.0kb upstream 13273 true Chr1: 20854339-20867611 Arabidopsis thaliana
AT1G55820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20854339-20864338 Arabidopsis thaliana
AT1G55820 10.0kb downstream 10.0kb downstream 13273 true Chr1: 20864339-20877611 Arabidopsis thaliana
AT1G55820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20867612-20877611 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779855 5273 Angiosperm View MSA
122343486 5261 Brassicaceae View MSA
123783670 5264 Brassicales-Malvales View MSA
124350634 5266 SBM View MSA
124253797 5268 Malvidae View MSA
124069952 5270 Rosid View MSA
123744353 5271 Pentapetalae View MSA
122771039 5272 Eudicot View MSA
121051492 5274 Embryophyte View MSA
123091579 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.76        
cufflinks 4.886        
cufflinks 2.416        
cufflinks 5.55       High
cufflinks 2.061       Low
cufflinks 5.043        

0 Strain