Gene : AT1G55680 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22847//PTHR22847:SF478 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4626
Name:  ? AT1G55680 Secondary Identifier:  ? PAC:19650852
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55680 0.5kb upstream 0.5kb upstream 3849 true Chr1: 20804592-20808440 Arabidopsis thaliana
AT1G55680 0.5kb upstream 0.5kb upstream 500 false Chr1: 20807941-20808440 Arabidopsis thaliana
AT1G55680 0.5kb downstream 0.5kb downstream 3849 true Chr1: 20804092-20807940 Arabidopsis thaliana
AT1G55680 0.5kb downstream 0.5kb downstream 500 false Chr1: 20804092-20804591 Arabidopsis thaliana
AT1G55680 1.0kb upstream 1.0kb upstream 4349 true Chr1: 20804592-20808940 Arabidopsis thaliana
AT1G55680 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20807941-20808940 Arabidopsis thaliana
AT1G55680 1.0kb downstream 1.0kb downstream 4349 true Chr1: 20803592-20807940 Arabidopsis thaliana
AT1G55680 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20803592-20804591 Arabidopsis thaliana
AT1G55680 2.0kb upstream 2.0kb upstream 5349 true Chr1: 20804592-20809940 Arabidopsis thaliana
AT1G55680 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20807941-20809940 Arabidopsis thaliana
AT1G55680 2.0kb downstream 2.0kb downstream 5349 true Chr1: 20802592-20807940 Arabidopsis thaliana
AT1G55680 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20802592-20804591 Arabidopsis thaliana
AT1G55680 5.0kb upstream 5.0kb upstream 8349 true Chr1: 20804592-20812940 Arabidopsis thaliana
AT1G55680 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20807941-20812940 Arabidopsis thaliana
AT1G55680 5.0kb downstream 5.0kb downstream 8349 true Chr1: 20799592-20807940 Arabidopsis thaliana
AT1G55680 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20799592-20804591 Arabidopsis thaliana
AT1G55680 10.0kb upstream 10.0kb upstream 13349 true Chr1: 20804592-20817940 Arabidopsis thaliana
AT1G55680 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20807941-20817940 Arabidopsis thaliana
AT1G55680 10.0kb downstream 10.0kb downstream 13349 true Chr1: 20794592-20807940 Arabidopsis thaliana
AT1G55680 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20794592-20804591 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041408 5273 Angiosperm View MSA
122373823 5261 Brassicaceae View MSA
123836250 5264 Brassicales-Malvales View MSA
124350109 5266 SBM View MSA
124245380 5268 Malvidae View MSA
124065588 5270 Rosid View MSA
123745758 5271 Pentapetalae View MSA
122795577 5272 Eudicot View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.77     High High
cufflinks 32.648     High  
cufflinks 30.044     High Low
cufflinks 34.342     High  
cufflinks 32.995     High  
cufflinks 31.12     High  

0 Strain