Gene : AT1G55230 A. thaliana TAIR10
Defline:  (1 of 3) PTHR16007//PTHR16007:SF29 - EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4576
Name:  ? AT1G55230 Secondary Identifier:  ? PAC:19656170
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55230 0.5kb upstream 0.5kb upstream 1606 true Chr1: 20602319-20603924 Arabidopsis thaliana
AT1G55230 0.5kb upstream 0.5kb upstream 500 false Chr1: 20602319-20602818 Arabidopsis thaliana
AT1G55230 0.5kb downstream 0.5kb downstream 1606 true Chr1: 20602819-20604424 Arabidopsis thaliana
AT1G55230 0.5kb downstream 0.5kb downstream 500 false Chr1: 20603925-20604424 Arabidopsis thaliana
AT1G55230 1.0kb upstream 1.0kb upstream 2106 true Chr1: 20601819-20603924 Arabidopsis thaliana
AT1G55230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20601819-20602818 Arabidopsis thaliana
AT1G55230 1.0kb downstream 1.0kb downstream 2106 true Chr1: 20602819-20604924 Arabidopsis thaliana
AT1G55230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20603925-20604924 Arabidopsis thaliana
AT1G55230 2.0kb upstream 2.0kb upstream 3106 true Chr1: 20600819-20603924 Arabidopsis thaliana
AT1G55230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20600819-20602818 Arabidopsis thaliana
AT1G55230 2.0kb downstream 2.0kb downstream 3106 true Chr1: 20602819-20605924 Arabidopsis thaliana
AT1G55230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20603925-20605924 Arabidopsis thaliana
AT1G55230 5.0kb upstream 5.0kb upstream 6106 true Chr1: 20597819-20603924 Arabidopsis thaliana
AT1G55230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20597819-20602818 Arabidopsis thaliana
AT1G55230 5.0kb downstream 5.0kb downstream 6106 true Chr1: 20602819-20608924 Arabidopsis thaliana
AT1G55230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20603925-20608924 Arabidopsis thaliana
AT1G55230 10.0kb upstream 10.0kb upstream 11106 true Chr1: 20592819-20603924 Arabidopsis thaliana
AT1G55230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20592819-20602818 Arabidopsis thaliana
AT1G55230 10.0kb downstream 10.0kb downstream 11106 true Chr1: 20602819-20613924 Arabidopsis thaliana
AT1G55230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20603925-20613924 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372586 5261 Brassicaceae View MSA
123837773 5264 Brassicales-Malvales View MSA
124350524 5266 SBM View MSA
124243278 5268 Malvidae View MSA
124068390 5270 Rosid View MSA
123738085 5271 Pentapetalae View MSA
122788198 5272 Eudicot View MSA
122043341 5273 Angiosperm View MSA
121350277 5274 Embryophyte View MSA
123426219 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.142     Low  
cufflinks 0.368        
cufflinks 0.149     Low  
cufflinks 2.767       High
cufflinks 0.216     Low  
cufflinks 0.451        

0 Strain