Gene : SCL33 A. thaliana TAIR10
Primary Identifier:  ? AT1G55310 Defline:  (1 of 1) KOG0107//KOG0114//KOG4207 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily
Genomic Order:  4585 Name:  ? AT1G55310
Secondary Identifier:  ? PAC:19652353
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55310 0.5kb upstream 0.5kb upstream 3409 true Chr1: 20629565-20632973 Arabidopsis thaliana
AT1G55310 0.5kb upstream 0.5kb upstream 500 false Chr1: 20629565-20630064 Arabidopsis thaliana
AT1G55310 0.5kb downstream 0.5kb downstream 3409 true Chr1: 20630065-20633473 Arabidopsis thaliana
AT1G55310 0.5kb downstream 0.5kb downstream 500 false Chr1: 20632974-20633473 Arabidopsis thaliana
AT1G55310 1.0kb upstream 1.0kb upstream 3909 true Chr1: 20629065-20632973 Arabidopsis thaliana
AT1G55310 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20629065-20630064 Arabidopsis thaliana
AT1G55310 1.0kb downstream 1.0kb downstream 3909 true Chr1: 20630065-20633973 Arabidopsis thaliana
AT1G55310 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20632974-20633973 Arabidopsis thaliana
AT1G55310 2.0kb upstream 2.0kb upstream 4909 true Chr1: 20628065-20632973 Arabidopsis thaliana
AT1G55310 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20628065-20630064 Arabidopsis thaliana
AT1G55310 2.0kb downstream 2.0kb downstream 4909 true Chr1: 20630065-20634973 Arabidopsis thaliana
AT1G55310 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20632974-20634973 Arabidopsis thaliana
AT1G55310 5.0kb upstream 5.0kb upstream 7909 true Chr1: 20625065-20632973 Arabidopsis thaliana
AT1G55310 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20625065-20630064 Arabidopsis thaliana
AT1G55310 5.0kb downstream 5.0kb downstream 7909 true Chr1: 20630065-20637973 Arabidopsis thaliana
AT1G55310 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20632974-20637973 Arabidopsis thaliana
AT1G55310 10.0kb upstream 10.0kb upstream 12909 true Chr1: 20620065-20632973 Arabidopsis thaliana
AT1G55310 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20620065-20630064 Arabidopsis thaliana
AT1G55310 10.0kb downstream 10.0kb downstream 12909 true Chr1: 20630065-20642973 Arabidopsis thaliana
AT1G55310 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20632974-20642973 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362078 5261 Brassicaceae View MSA
123837044 5264 Brassicales-Malvales View MSA
124336689 5266 SBM View MSA
124238821 5268 Malvidae View MSA
124061952 5270 Rosid View MSA
123751655 5271 Pentapetalae View MSA
122788413 5272 Eudicot View MSA
122045186 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349478 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.008        
cufflinks 7.35        
cufflinks 3.748       Low
cufflinks 8.906       High
cufflinks 4.664        
cufflinks 6.034        

0 Strain