Gene : AT1G55040 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23111//PTHR23111:SF29 - ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4553
Name:  ? AT1G55040 Secondary Identifier:  ? PAC:19651551
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55040 0.5kb upstream 0.5kb upstream 4740 true Chr1: 20534374-20539113 Arabidopsis thaliana
AT1G55040 0.5kb upstream 0.5kb upstream 500 false Chr1: 20534374-20534873 Arabidopsis thaliana
AT1G55040 0.5kb downstream 0.5kb downstream 4740 true Chr1: 20534874-20539613 Arabidopsis thaliana
AT1G55040 0.5kb downstream 0.5kb downstream 500 false Chr1: 20539114-20539613 Arabidopsis thaliana
AT1G55040 1.0kb upstream 1.0kb upstream 5240 true Chr1: 20533874-20539113 Arabidopsis thaliana
AT1G55040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20533874-20534873 Arabidopsis thaliana
AT1G55040 1.0kb downstream 1.0kb downstream 5240 true Chr1: 20534874-20540113 Arabidopsis thaliana
AT1G55040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20539114-20540113 Arabidopsis thaliana
AT1G55040 2.0kb upstream 2.0kb upstream 6240 true Chr1: 20532874-20539113 Arabidopsis thaliana
AT1G55040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20532874-20534873 Arabidopsis thaliana
AT1G55040 2.0kb downstream 2.0kb downstream 6240 true Chr1: 20534874-20541113 Arabidopsis thaliana
AT1G55040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20539114-20541113 Arabidopsis thaliana
AT1G55040 5.0kb upstream 5.0kb upstream 9240 true Chr1: 20529874-20539113 Arabidopsis thaliana
AT1G55040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20529874-20534873 Arabidopsis thaliana
AT1G55040 5.0kb downstream 5.0kb downstream 9240 true Chr1: 20534874-20544113 Arabidopsis thaliana
AT1G55040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20539114-20544113 Arabidopsis thaliana
AT1G55040 10.0kb upstream 10.0kb upstream 14240 true Chr1: 20524874-20539113 Arabidopsis thaliana
AT1G55040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20524874-20534873 Arabidopsis thaliana
AT1G55040 10.0kb downstream 10.0kb downstream 14240 true Chr1: 20534874-20549113 Arabidopsis thaliana
AT1G55040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20539114-20549113 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365652 5261 Brassicaceae View MSA
123835641 5264 Brassicales-Malvales View MSA
124343349 5266 SBM View MSA
124250004 5268 Malvidae View MSA
124064644 5270 Rosid View MSA
123741266 5271 Pentapetalae View MSA
122789459 5272 Eudicot View MSA
122043265 5273 Angiosperm View MSA
121349230 5274 Embryophyte View MSA
123427278 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.472        
cufflinks 3.276        
cufflinks 1.514       Low
cufflinks 3.316        
cufflinks 1.405       Low
cufflinks 3.759       High

0 Strain