Gene : AT1G55000 A. thaliana TAIR10
Defline:  (1 of 1) PTHR20932//PTHR20932:SF9 - LOC443603 PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4549
Name:  ? AT1G55000 Secondary Identifier:  ? PAC:19656660
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55000 0.5kb upstream 0.5kb upstream 2363 true Chr1: 20514134-20516496 Arabidopsis thaliana
AT1G55000 0.5kb upstream 0.5kb upstream 500 false Chr1: 20514134-20514633 Arabidopsis thaliana
AT1G55000 0.5kb downstream 0.5kb downstream 2363 true Chr1: 20514634-20516996 Arabidopsis thaliana
AT1G55000 0.5kb downstream 0.5kb downstream 500 false Chr1: 20516497-20516996 Arabidopsis thaliana
AT1G55000 1.0kb upstream 1.0kb upstream 2863 true Chr1: 20513634-20516496 Arabidopsis thaliana
AT1G55000 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20513634-20514633 Arabidopsis thaliana
AT1G55000 1.0kb downstream 1.0kb downstream 2863 true Chr1: 20514634-20517496 Arabidopsis thaliana
AT1G55000 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20516497-20517496 Arabidopsis thaliana
AT1G55000 2.0kb upstream 2.0kb upstream 3863 true Chr1: 20512634-20516496 Arabidopsis thaliana
AT1G55000 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20512634-20514633 Arabidopsis thaliana
AT1G55000 2.0kb downstream 2.0kb downstream 3863 true Chr1: 20514634-20518496 Arabidopsis thaliana
AT1G55000 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20516497-20518496 Arabidopsis thaliana
AT1G55000 5.0kb upstream 5.0kb upstream 6863 true Chr1: 20509634-20516496 Arabidopsis thaliana
AT1G55000 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20509634-20514633 Arabidopsis thaliana
AT1G55000 5.0kb downstream 5.0kb downstream 6863 true Chr1: 20514634-20521496 Arabidopsis thaliana
AT1G55000 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20516497-20521496 Arabidopsis thaliana
AT1G55000 10.0kb upstream 10.0kb upstream 11863 true Chr1: 20504634-20516496 Arabidopsis thaliana
AT1G55000 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20504634-20514633 Arabidopsis thaliana
AT1G55000 10.0kb downstream 10.0kb downstream 11863 true Chr1: 20514634-20526496 Arabidopsis thaliana
AT1G55000 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20516497-20526496 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364438 5261 Brassicaceae View MSA
123827620 5264 Brassicales-Malvales View MSA
124345443 5266 SBM View MSA
124245072 5268 Malvidae View MSA
124067159 5270 Rosid View MSA
123748908 5271 Pentapetalae View MSA
122796552 5272 Eudicot View MSA
122043653 5273 Angiosperm View MSA
121310161 5274 Embryophyte View MSA
123425497 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.591        
cufflinks 2.283        
cufflinks 5.925        
cufflinks 2.595        
cufflinks 6.355        
cufflinks 1.726       Low

0 Strain