Gene : LOX1 A. thaliana TAIR10
Primary Identifier:  ? AT1G55020 Defline:  (1 of 1) PTHR11771//PTHR11771:SF48 - LIPOXYGENASE // LINOLEATE 9S-LIPOXYGENASE 1
Genomic Order:  4551 Name:  ? AT1G55020
Secondary Identifier:  ? PAC:19650711
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55020 0.5kb upstream 0.5kb upstream 5066 true Chr1: 20525208-20530273 Arabidopsis thaliana
AT1G55020 0.5kb upstream 0.5kb upstream 500 false Chr1: 20525208-20525707 Arabidopsis thaliana
AT1G55020 0.5kb downstream 0.5kb downstream 5066 true Chr1: 20525708-20530773 Arabidopsis thaliana
AT1G55020 0.5kb downstream 0.5kb downstream 500 false Chr1: 20530274-20530773 Arabidopsis thaliana
AT1G55020 1.0kb upstream 1.0kb upstream 5566 true Chr1: 20524708-20530273 Arabidopsis thaliana
AT1G55020 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20524708-20525707 Arabidopsis thaliana
AT1G55020 1.0kb downstream 1.0kb downstream 5566 true Chr1: 20525708-20531273 Arabidopsis thaliana
AT1G55020 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20530274-20531273 Arabidopsis thaliana
AT1G55020 2.0kb upstream 2.0kb upstream 6566 true Chr1: 20523708-20530273 Arabidopsis thaliana
AT1G55020 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20523708-20525707 Arabidopsis thaliana
AT1G55020 2.0kb downstream 2.0kb downstream 6566 true Chr1: 20525708-20532273 Arabidopsis thaliana
AT1G55020 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20530274-20532273 Arabidopsis thaliana
AT1G55020 5.0kb upstream 5.0kb upstream 9566 true Chr1: 20520708-20530273 Arabidopsis thaliana
AT1G55020 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20520708-20525707 Arabidopsis thaliana
AT1G55020 5.0kb downstream 5.0kb downstream 9566 true Chr1: 20525708-20535273 Arabidopsis thaliana
AT1G55020 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20530274-20535273 Arabidopsis thaliana
AT1G55020 10.0kb upstream 10.0kb upstream 14566 true Chr1: 20515708-20530273 Arabidopsis thaliana
AT1G55020 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20515708-20525707 Arabidopsis thaliana
AT1G55020 10.0kb downstream 10.0kb downstream 14566 true Chr1: 20525708-20540273 Arabidopsis thaliana
AT1G55020 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20530274-20540273 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122793975 5272 Eudicot View MSA
122366906 5261 Brassicaceae View MSA
123837943 5264 Brassicales-Malvales View MSA
124344316 5266 SBM View MSA
124245222 5268 Malvidae View MSA
124071703 5270 Rosid View MSA
123743828 5271 Pentapetalae View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.494        
cufflinks 31.993     High  
cufflinks 2.292       Low
cufflinks 57.268     High High
cufflinks 2.802        
cufflinks 33.627     High  

0 Strain