Gene : AT1G54770 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21686:SF12 - DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 2 Genomic Order:  4529
Name:  ? AT1G54770 Secondary Identifier:  ? PAC:19649984
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54770 0.5kb upstream 0.5kb upstream 1870 true Chr1: 20434139-20436008 Arabidopsis thaliana
AT1G54770 0.5kb upstream 0.5kb upstream 500 false Chr1: 20434139-20434638 Arabidopsis thaliana
AT1G54770 0.5kb downstream 0.5kb downstream 1870 true Chr1: 20434639-20436508 Arabidopsis thaliana
AT1G54770 0.5kb downstream 0.5kb downstream 500 false Chr1: 20436009-20436508 Arabidopsis thaliana
AT1G54770 1.0kb upstream 1.0kb upstream 2370 true Chr1: 20433639-20436008 Arabidopsis thaliana
AT1G54770 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20433639-20434638 Arabidopsis thaliana
AT1G54770 1.0kb downstream 1.0kb downstream 2370 true Chr1: 20434639-20437008 Arabidopsis thaliana
AT1G54770 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20436009-20437008 Arabidopsis thaliana
AT1G54770 2.0kb upstream 2.0kb upstream 3370 true Chr1: 20432639-20436008 Arabidopsis thaliana
AT1G54770 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20432639-20434638 Arabidopsis thaliana
AT1G54770 2.0kb downstream 2.0kb downstream 3370 true Chr1: 20434639-20438008 Arabidopsis thaliana
AT1G54770 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20436009-20438008 Arabidopsis thaliana
AT1G54770 5.0kb upstream 5.0kb upstream 6370 true Chr1: 20429639-20436008 Arabidopsis thaliana
AT1G54770 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20429639-20434638 Arabidopsis thaliana
AT1G54770 5.0kb downstream 5.0kb downstream 6370 true Chr1: 20434639-20441008 Arabidopsis thaliana
AT1G54770 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20436009-20441008 Arabidopsis thaliana
AT1G54770 10.0kb upstream 10.0kb upstream 11370 true Chr1: 20424639-20436008 Arabidopsis thaliana
AT1G54770 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20424639-20434638 Arabidopsis thaliana
AT1G54770 10.0kb downstream 10.0kb downstream 11370 true Chr1: 20434639-20446008 Arabidopsis thaliana
AT1G54770 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20436009-20446008 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121493167 5273 Angiosperm Singleton cluster - no MSA
122328401 5261 Brassicaceae Singleton cluster - no MSA
123769757 5264 Brassicales-Malvales Singleton cluster - no MSA
124268309 5266 SBM Singleton cluster - no MSA
124124521 5268 Malvidae Singleton cluster - no MSA
123853548 5270 Rosid Singleton cluster - no MSA
123439616 5271 Pentapetalae Singleton cluster - no MSA
122475209 5272 Eudicot Singleton cluster - no MSA
121349839 5274 Embryophyte View MSA
123427981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.112        
cufflinks 14.6        
cufflinks 9.999        
cufflinks 13.809        
cufflinks 8.139       Low
cufflinks 15.229        

0 Strain