Gene : AT1G54500 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10909//PTHR10909:SF287 - ELECTRON TRANSPORT OXIDOREDUCTASE // SUBFAMILY NOT NAMED Genomic Order:  4505
Name:  ? AT1G54500 Secondary Identifier:  ? PAC:19655373
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54500 0.5kb upstream 0.5kb upstream 1335 true Chr1: 20356954-20358288 Arabidopsis thaliana
AT1G54500 0.5kb upstream 0.5kb upstream 500 false Chr1: 20357789-20358288 Arabidopsis thaliana
AT1G54500 0.5kb downstream 0.5kb downstream 1335 true Chr1: 20356454-20357788 Arabidopsis thaliana
AT1G54500 0.5kb downstream 0.5kb downstream 500 false Chr1: 20356454-20356953 Arabidopsis thaliana
AT1G54500 1.0kb upstream 1.0kb upstream 1835 true Chr1: 20356954-20358788 Arabidopsis thaliana
AT1G54500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20357789-20358788 Arabidopsis thaliana
AT1G54500 1.0kb downstream 1.0kb downstream 1835 true Chr1: 20355954-20357788 Arabidopsis thaliana
AT1G54500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20355954-20356953 Arabidopsis thaliana
AT1G54500 2.0kb upstream 2.0kb upstream 2835 true Chr1: 20356954-20359788 Arabidopsis thaliana
AT1G54500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20357789-20359788 Arabidopsis thaliana
AT1G54500 2.0kb downstream 2.0kb downstream 2835 true Chr1: 20354954-20357788 Arabidopsis thaliana
AT1G54500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20354954-20356953 Arabidopsis thaliana
AT1G54500 5.0kb upstream 5.0kb upstream 5835 true Chr1: 20356954-20362788 Arabidopsis thaliana
AT1G54500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20357789-20362788 Arabidopsis thaliana
AT1G54500 5.0kb downstream 5.0kb downstream 5835 true Chr1: 20351954-20357788 Arabidopsis thaliana
AT1G54500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20351954-20356953 Arabidopsis thaliana
AT1G54500 10.0kb upstream 10.0kb upstream 10835 true Chr1: 20356954-20367788 Arabidopsis thaliana
AT1G54500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20357789-20367788 Arabidopsis thaliana
AT1G54500 10.0kb downstream 10.0kb downstream 10835 true Chr1: 20346954-20357788 Arabidopsis thaliana
AT1G54500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20346954-20356953 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366276 5261 Brassicaceae View MSA
123829351 5264 Brassicales-Malvales View MSA
124341656 5266 SBM View MSA
124240418 5268 Malvidae View MSA
124060784 5270 Rosid View MSA
123739344 5271 Pentapetalae View MSA
122794203 5272 Eudicot View MSA
122043182 5273 Angiosperm View MSA
121348093 5274 Embryophyte View MSA
123428721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 166.759     High  
cufflinks 5.333        
cufflinks 187.39     High High
cufflinks 6.175        
cufflinks 105.134     High  
cufflinks 3.95       Low

0 Strain