Gene : AT1G54650 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22809//PTHR22809:SF5 - METHYLTRANSFERASE-RELATED // METHYLTRANSFERASE FAMILY PROTEIN Genomic Order:  4520
Name:  ? AT1G54650 Secondary Identifier:  ? PAC:19649426
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54650 0.5kb upstream 0.5kb upstream 2656 true Chr1: 20405598-20408253 Arabidopsis thaliana
AT1G54650 0.5kb upstream 0.5kb upstream 500 false Chr1: 20407754-20408253 Arabidopsis thaliana
AT1G54650 0.5kb downstream 0.5kb downstream 2656 true Chr1: 20405098-20407753 Arabidopsis thaliana
AT1G54650 0.5kb downstream 0.5kb downstream 500 false Chr1: 20405098-20405597 Arabidopsis thaliana
AT1G54650 1.0kb upstream 1.0kb upstream 3156 true Chr1: 20405598-20408753 Arabidopsis thaliana
AT1G54650 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20407754-20408753 Arabidopsis thaliana
AT1G54650 1.0kb downstream 1.0kb downstream 3156 true Chr1: 20404598-20407753 Arabidopsis thaliana
AT1G54650 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20404598-20405597 Arabidopsis thaliana
AT1G54650 2.0kb upstream 2.0kb upstream 4156 true Chr1: 20405598-20409753 Arabidopsis thaliana
AT1G54650 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20407754-20409753 Arabidopsis thaliana
AT1G54650 2.0kb downstream 2.0kb downstream 4156 true Chr1: 20403598-20407753 Arabidopsis thaliana
AT1G54650 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20403598-20405597 Arabidopsis thaliana
AT1G54650 5.0kb upstream 5.0kb upstream 7156 true Chr1: 20405598-20412753 Arabidopsis thaliana
AT1G54650 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20407754-20412753 Arabidopsis thaliana
AT1G54650 5.0kb downstream 5.0kb downstream 7156 true Chr1: 20400598-20407753 Arabidopsis thaliana
AT1G54650 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20400598-20405597 Arabidopsis thaliana
AT1G54650 10.0kb upstream 10.0kb upstream 12156 true Chr1: 20405598-20417753 Arabidopsis thaliana
AT1G54650 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20407754-20417753 Arabidopsis thaliana
AT1G54650 10.0kb downstream 10.0kb downstream 12156 true Chr1: 20395598-20407753 Arabidopsis thaliana
AT1G54650 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20395598-20405597 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361580 5261 Brassicaceae View MSA
123830550 5264 Brassicales-Malvales View MSA
124346582 5266 SBM View MSA
124240021 5268 Malvidae View MSA
124072534 5270 Rosid View MSA
123745301 5271 Pentapetalae View MSA
122795426 5272 Eudicot View MSA
122042044 5273 Angiosperm View MSA
121347914 5274 Embryophyte View MSA
123424588 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.38        
cufflinks 3.989       High
cufflinks 1.448        
cufflinks 2.906        
cufflinks 1.228       Low
cufflinks 3.05        

0 Strain