Gene : NEK1 A. thaliana TAIR10
Primary Identifier:  ? AT1G54510 Defline:  (1 of 3) PTHR24362:SF255 - SERINE/THREONINE-PROTEIN KINASE NEK1
Genomic Order:  4506 Name:  ? AT1G54510
Secondary Identifier:  ? PAC:19650837
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54510 0.5kb upstream 0.5kb upstream 4775 true Chr1: 20358319-20363093 Arabidopsis thaliana
AT1G54510 0.5kb upstream 0.5kb upstream 500 false Chr1: 20362594-20363093 Arabidopsis thaliana
AT1G54510 0.5kb downstream 0.5kb downstream 4775 true Chr1: 20357819-20362593 Arabidopsis thaliana
AT1G54510 0.5kb downstream 0.5kb downstream 500 false Chr1: 20357819-20358318 Arabidopsis thaliana
AT1G54510 1.0kb upstream 1.0kb upstream 5275 true Chr1: 20358319-20363593 Arabidopsis thaliana
AT1G54510 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20362594-20363593 Arabidopsis thaliana
AT1G54510 1.0kb downstream 1.0kb downstream 5275 true Chr1: 20357319-20362593 Arabidopsis thaliana
AT1G54510 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20357319-20358318 Arabidopsis thaliana
AT1G54510 2.0kb upstream 2.0kb upstream 6275 true Chr1: 20358319-20364593 Arabidopsis thaliana
AT1G54510 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20362594-20364593 Arabidopsis thaliana
AT1G54510 2.0kb downstream 2.0kb downstream 6275 true Chr1: 20356319-20362593 Arabidopsis thaliana
AT1G54510 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20356319-20358318 Arabidopsis thaliana
AT1G54510 5.0kb upstream 5.0kb upstream 9275 true Chr1: 20358319-20367593 Arabidopsis thaliana
AT1G54510 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20362594-20367593 Arabidopsis thaliana
AT1G54510 5.0kb downstream 5.0kb downstream 9275 true Chr1: 20353319-20362593 Arabidopsis thaliana
AT1G54510 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20353319-20358318 Arabidopsis thaliana
AT1G54510 10.0kb upstream 10.0kb upstream 14275 true Chr1: 20358319-20372593 Arabidopsis thaliana
AT1G54510 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20362594-20372593 Arabidopsis thaliana
AT1G54510 10.0kb downstream 10.0kb downstream 14275 true Chr1: 20348319-20362593 Arabidopsis thaliana
AT1G54510 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20348319-20358318 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343501 5261 Brassicaceae View MSA
123841661 5264 Brassicales-Malvales View MSA
124342661 5266 SBM View MSA
124247909 5268 Malvidae View MSA
124070127 5270 Rosid View MSA
123743821 5271 Pentapetalae View MSA
122789481 5272 Eudicot View MSA
122043022 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310065 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.683       Low
cufflinks 4.917       High
cufflinks 0.811        
cufflinks 4.64        
cufflinks 0.923        
cufflinks 3.695        

0 Strain