Gene : AT1G54440 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12124//PTHR12124:SF43 - POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4499
Name:  ? AT1G54440 Secondary Identifier:  ? PAC:19654979
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54440 0.5kb upstream 0.5kb upstream 5532 true Chr1: 20322536-20328067 Arabidopsis thaliana
AT1G54440 0.5kb upstream 0.5kb upstream 500 false Chr1: 20322536-20323035 Arabidopsis thaliana
AT1G54440 0.5kb downstream 0.5kb downstream 5532 true Chr1: 20323036-20328567 Arabidopsis thaliana
AT1G54440 0.5kb downstream 0.5kb downstream 500 false Chr1: 20328068-20328567 Arabidopsis thaliana
AT1G54440 1.0kb upstream 1.0kb upstream 6032 true Chr1: 20322036-20328067 Arabidopsis thaliana
AT1G54440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20322036-20323035 Arabidopsis thaliana
AT1G54440 1.0kb downstream 1.0kb downstream 6032 true Chr1: 20323036-20329067 Arabidopsis thaliana
AT1G54440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20328068-20329067 Arabidopsis thaliana
AT1G54440 2.0kb upstream 2.0kb upstream 7032 true Chr1: 20321036-20328067 Arabidopsis thaliana
AT1G54440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20321036-20323035 Arabidopsis thaliana
AT1G54440 2.0kb downstream 2.0kb downstream 7032 true Chr1: 20323036-20330067 Arabidopsis thaliana
AT1G54440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20328068-20330067 Arabidopsis thaliana
AT1G54440 5.0kb upstream 5.0kb upstream 10032 true Chr1: 20318036-20328067 Arabidopsis thaliana
AT1G54440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20318036-20323035 Arabidopsis thaliana
AT1G54440 5.0kb downstream 5.0kb downstream 10032 true Chr1: 20323036-20333067 Arabidopsis thaliana
AT1G54440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20328068-20333067 Arabidopsis thaliana
AT1G54440 10.0kb upstream 10.0kb upstream 15032 true Chr1: 20313036-20328067 Arabidopsis thaliana
AT1G54440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20313036-20323035 Arabidopsis thaliana
AT1G54440 10.0kb downstream 10.0kb downstream 15032 true Chr1: 20323036-20338067 Arabidopsis thaliana
AT1G54440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20328068-20338067 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780131 5273 Angiosperm View MSA
122328807 5261 Brassicaceae Singleton cluster - no MSA
123770140 5264 Brassicales-Malvales Singleton cluster - no MSA
124268686 5266 SBM Singleton cluster - no MSA
124124873 5268 Malvidae Singleton cluster - no MSA
123853871 5270 Rosid Singleton cluster - no MSA
123745214 5271 Pentapetalae View MSA
122771410 5272 Eudicot View MSA
121051758 5274 Embryophyte View MSA
123091833 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.524        
cufflinks 3.832        
cufflinks 2.5       Low
cufflinks 3.65        
cufflinks 2.365       Low
cufflinks 3.59        

0 Strain