Gene : AT1G54220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4477
Name:  ? AT1G54220 Secondary Identifier:  ? PAC:19654840
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5173 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PYRUVDEHYD-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54220 0.5kb upstream 0.5kb upstream 4774 true Chr1: 20246037-20250810 Arabidopsis thaliana
AT1G54220 0.5kb upstream 0.5kb upstream 500 false Chr1: 20250311-20250810 Arabidopsis thaliana
AT1G54220 0.5kb downstream 0.5kb downstream 4774 true Chr1: 20245537-20250310 Arabidopsis thaliana
AT1G54220 0.5kb downstream 0.5kb downstream 500 false Chr1: 20245537-20246036 Arabidopsis thaliana
AT1G54220 1.0kb upstream 1.0kb upstream 5274 true Chr1: 20246037-20251310 Arabidopsis thaliana
AT1G54220 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20250311-20251310 Arabidopsis thaliana
AT1G54220 1.0kb downstream 1.0kb downstream 5274 true Chr1: 20245037-20250310 Arabidopsis thaliana
AT1G54220 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20245037-20246036 Arabidopsis thaliana
AT1G54220 2.0kb upstream 2.0kb upstream 6274 true Chr1: 20246037-20252310 Arabidopsis thaliana
AT1G54220 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20250311-20252310 Arabidopsis thaliana
AT1G54220 2.0kb downstream 2.0kb downstream 6274 true Chr1: 20244037-20250310 Arabidopsis thaliana
AT1G54220 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20244037-20246036 Arabidopsis thaliana
AT1G54220 5.0kb upstream 5.0kb upstream 9274 true Chr1: 20246037-20255310 Arabidopsis thaliana
AT1G54220 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20250311-20255310 Arabidopsis thaliana
AT1G54220 5.0kb downstream 5.0kb downstream 9274 true Chr1: 20241037-20250310 Arabidopsis thaliana
AT1G54220 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20241037-20246036 Arabidopsis thaliana
AT1G54220 10.0kb upstream 10.0kb upstream 14274 true Chr1: 20246037-20260310 Arabidopsis thaliana
AT1G54220 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20250311-20260310 Arabidopsis thaliana
AT1G54220 10.0kb downstream 10.0kb downstream 14274 true Chr1: 20236037-20250310 Arabidopsis thaliana
AT1G54220 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20236037-20246036 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372168 5261 Brassicaceae View MSA
123835606 5264 Brassicales-Malvales View MSA
124344538 5266 SBM View MSA
124243608 5268 Malvidae View MSA
124061053 5270 Rosid View MSA
123739083 5271 Pentapetalae View MSA
122788575 5272 Eudicot View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.304        
cufflinks 3.358        
cufflinks 2.901        
cufflinks 3.342        
cufflinks 2.156       Low
cufflinks 3.847       High

0 Strain