Gene : YUC9 A. thaliana TAIR10
Primary Identifier:  ? AT1G04180 Defline:  (1 of 1) PF13434 - L-lysine 6-monooxygenase (NADPH-requiring) (K_oxygenase)
Genomic Order:  333 Name:  ? AT1G04180
Secondary Identifier:  ? PAC:19650032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWYDQC-4 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04180 0.5kb upstream 0.5kb upstream 1866 true Chr1: 1104123-1105988 Arabidopsis thaliana
AT1G04180 0.5kb upstream 0.5kb upstream 500 false Chr1: 1104123-1104622 Arabidopsis thaliana
AT1G04180 0.5kb downstream 0.5kb downstream 1866 true Chr1: 1104623-1106488 Arabidopsis thaliana
AT1G04180 0.5kb downstream 0.5kb downstream 500 false Chr1: 1105989-1106488 Arabidopsis thaliana
AT1G04180 1.0kb upstream 1.0kb upstream 2366 true Chr1: 1103623-1105988 Arabidopsis thaliana
AT1G04180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1103623-1104622 Arabidopsis thaliana
AT1G04180 1.0kb downstream 1.0kb downstream 2366 true Chr1: 1104623-1106988 Arabidopsis thaliana
AT1G04180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1105989-1106988 Arabidopsis thaliana
AT1G04180 2.0kb upstream 2.0kb upstream 3366 true Chr1: 1102623-1105988 Arabidopsis thaliana
AT1G04180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1102623-1104622 Arabidopsis thaliana
AT1G04180 2.0kb downstream 2.0kb downstream 3366 true Chr1: 1104623-1107988 Arabidopsis thaliana
AT1G04180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1105989-1107988 Arabidopsis thaliana
AT1G04180 5.0kb upstream 5.0kb upstream 6366 true Chr1: 1099623-1105988 Arabidopsis thaliana
AT1G04180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1099623-1104622 Arabidopsis thaliana
AT1G04180 5.0kb downstream 5.0kb downstream 6366 true Chr1: 1104623-1110988 Arabidopsis thaliana
AT1G04180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1105989-1110988 Arabidopsis thaliana
AT1G04180 10.0kb upstream 10.0kb upstream 11366 true Chr1: 1094623-1105988 Arabidopsis thaliana
AT1G04180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1094623-1104622 Arabidopsis thaliana
AT1G04180 10.0kb downstream 10.0kb downstream 11366 true Chr1: 1104623-1115988 Arabidopsis thaliana
AT1G04180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1105989-1115988 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361741 5261 Brassicaceae View MSA
123798237 5264 Brassicales-Malvales View MSA
124295905 5266 SBM View MSA
124148212 5268 Malvidae View MSA
123874256 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.05     Low Low
cufflinks 8.246        
cufflinks 0.14     Low  
cufflinks 15.075       High
cufflinks 0.289        
cufflinks 7.043        

0 Strain