Gene : AT1G03940 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31625:SF2 - COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED Genomic Order:  308
Name:  ? AT1G03940 Secondary Identifier:  ? PAC:19654400
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G03940 0.5kb upstream 0.5kb upstream 2015 true Chr1: 1009542-1011556 Arabidopsis thaliana
AT1G03940 0.5kb upstream 0.5kb upstream 500 false Chr1: 1011057-1011556 Arabidopsis thaliana
AT1G03940 0.5kb downstream 0.5kb downstream 2015 true Chr1: 1009042-1011056 Arabidopsis thaliana
AT1G03940 0.5kb downstream 0.5kb downstream 500 false Chr1: 1009042-1009541 Arabidopsis thaliana
AT1G03940 1.0kb upstream 1.0kb upstream 2515 true Chr1: 1009542-1012056 Arabidopsis thaliana
AT1G03940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1011057-1012056 Arabidopsis thaliana
AT1G03940 1.0kb downstream 1.0kb downstream 2515 true Chr1: 1008542-1011056 Arabidopsis thaliana
AT1G03940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1008542-1009541 Arabidopsis thaliana
AT1G03940 2.0kb upstream 2.0kb upstream 3515 true Chr1: 1009542-1013056 Arabidopsis thaliana
AT1G03940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1011057-1013056 Arabidopsis thaliana
AT1G03940 2.0kb downstream 2.0kb downstream 3515 true Chr1: 1007542-1011056 Arabidopsis thaliana
AT1G03940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1007542-1009541 Arabidopsis thaliana
AT1G03940 5.0kb upstream 5.0kb upstream 6515 true Chr1: 1009542-1016056 Arabidopsis thaliana
AT1G03940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1011057-1016056 Arabidopsis thaliana
AT1G03940 5.0kb downstream 5.0kb downstream 6515 true Chr1: 1004542-1011056 Arabidopsis thaliana
AT1G03940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1004542-1009541 Arabidopsis thaliana
AT1G03940 10.0kb upstream 10.0kb upstream 11515 true Chr1: 1009542-1021056 Arabidopsis thaliana
AT1G03940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1011057-1021056 Arabidopsis thaliana
AT1G03940 10.0kb downstream 10.0kb downstream 11515 true Chr1: 999542-1011056 Arabidopsis thaliana
AT1G03940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 999542-1009541 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363534 5261 Brassicaceae View MSA
123835730 5264 Brassicales-Malvales View MSA
124347108 5266 SBM View MSA
124248659 5268 Malvidae View MSA
124073771 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.105       High
cufflinks 0.152     Low Low
cufflinks 0.402        
cufflinks 0.785        
cufflinks 0.748        
cufflinks 0.134     Low Low

0 Strain