Gene : SOM A. thaliana TAIR10
Primary Identifier:  ? AT1G03790 Defline:  (1 of 2) PTHR14493//PTHR14493:SF53 - UNCHARACTERIZED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2-RELATED
Genomic Order:  292 Name:  ? AT1G03790
Secondary Identifier:  ? PAC:19650783
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G03790 0.5kb upstream 0.5kb upstream 2073 true Chr1: 954025-956097 Arabidopsis thaliana
AT1G03790 0.5kb upstream 0.5kb upstream 500 false Chr1: 954025-954524 Arabidopsis thaliana
AT1G03790 0.5kb downstream 0.5kb downstream 2073 true Chr1: 954525-956597 Arabidopsis thaliana
AT1G03790 0.5kb downstream 0.5kb downstream 500 false Chr1: 956098-956597 Arabidopsis thaliana
AT1G03790 1.0kb upstream 1.0kb upstream 2573 true Chr1: 953525-956097 Arabidopsis thaliana
AT1G03790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 953525-954524 Arabidopsis thaliana
AT1G03790 1.0kb downstream 1.0kb downstream 2573 true Chr1: 954525-957097 Arabidopsis thaliana
AT1G03790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 956098-957097 Arabidopsis thaliana
AT1G03790 2.0kb upstream 2.0kb upstream 3573 true Chr1: 952525-956097 Arabidopsis thaliana
AT1G03790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 952525-954524 Arabidopsis thaliana
AT1G03790 2.0kb downstream 2.0kb downstream 3573 true Chr1: 954525-958097 Arabidopsis thaliana
AT1G03790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 956098-958097 Arabidopsis thaliana
AT1G03790 5.0kb upstream 5.0kb upstream 6573 true Chr1: 949525-956097 Arabidopsis thaliana
AT1G03790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 949525-954524 Arabidopsis thaliana
AT1G03790 5.0kb downstream 5.0kb downstream 6573 true Chr1: 954525-961097 Arabidopsis thaliana
AT1G03790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 956098-961097 Arabidopsis thaliana
AT1G03790 10.0kb upstream 10.0kb upstream 11573 true Chr1: 944525-956097 Arabidopsis thaliana
AT1G03790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 944525-954524 Arabidopsis thaliana
AT1G03790 10.0kb downstream 10.0kb downstream 11573 true Chr1: 954525-966097 Arabidopsis thaliana
AT1G03790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 956098-966097 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378557 5261 Brassicaceae View MSA
123837623 5264 Brassicales-Malvales View MSA
124344221 5266 SBM View MSA
124254194 5268 Malvidae View MSA
124066464 5270 Rosid View MSA
123752127 5271 Pentapetalae View MSA
122796629 5272 Eudicot View MSA
122048745 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.13     Low  
cufflinks 0.038     Low  
cufflinks 0.023     Low  
cufflinks 0.596       High
cufflinks 0.052     Low  
cufflinks 0.039     Low  

0 Strain