Gene : AT1G03900 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12847:SF3 - NECAP-LIKE PROTEIN CG9132 Genomic Order:  303
Name:  ? AT1G03900 Secondary Identifier:  ? PAC:19654689
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G03900 0.5kb upstream 0.5kb upstream 2480 true Chr1: 990639-993118 Arabidopsis thaliana
AT1G03900 0.5kb upstream 0.5kb upstream 500 false Chr1: 990639-991138 Arabidopsis thaliana
AT1G03900 0.5kb downstream 0.5kb downstream 2480 true Chr1: 991139-993618 Arabidopsis thaliana
AT1G03900 0.5kb downstream 0.5kb downstream 500 false Chr1: 993119-993618 Arabidopsis thaliana
AT1G03900 1.0kb upstream 1.0kb upstream 2980 true Chr1: 990139-993118 Arabidopsis thaliana
AT1G03900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 990139-991138 Arabidopsis thaliana
AT1G03900 1.0kb downstream 1.0kb downstream 2980 true Chr1: 991139-994118 Arabidopsis thaliana
AT1G03900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 993119-994118 Arabidopsis thaliana
AT1G03900 2.0kb upstream 2.0kb upstream 3980 true Chr1: 989139-993118 Arabidopsis thaliana
AT1G03900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 989139-991138 Arabidopsis thaliana
AT1G03900 2.0kb downstream 2.0kb downstream 3980 true Chr1: 991139-995118 Arabidopsis thaliana
AT1G03900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 993119-995118 Arabidopsis thaliana
AT1G03900 5.0kb upstream 5.0kb upstream 6980 true Chr1: 986139-993118 Arabidopsis thaliana
AT1G03900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 986139-991138 Arabidopsis thaliana
AT1G03900 5.0kb downstream 5.0kb downstream 6980 true Chr1: 991139-998118 Arabidopsis thaliana
AT1G03900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 993119-998118 Arabidopsis thaliana
AT1G03900 10.0kb upstream 10.0kb upstream 11980 true Chr1: 981139-993118 Arabidopsis thaliana
AT1G03900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 981139-991138 Arabidopsis thaliana
AT1G03900 10.0kb downstream 10.0kb downstream 11980 true Chr1: 991139-1003118 Arabidopsis thaliana
AT1G03900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 993119-1003118 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378397 5261 Brassicaceae View MSA
123833928 5264 Brassicales-Malvales View MSA
124341247 5266 SBM View MSA
124253710 5268 Malvidae View MSA
124068673 5270 Rosid View MSA
123739095 5271 Pentapetalae View MSA
122787373 5272 Eudicot View MSA
122045557 5273 Angiosperm View MSA
121345773 5274 Embryophyte View MSA
123428646 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.418     High  
cufflinks 58.793     High  
cufflinks 33.033     High Low
cufflinks 62.278     High High
cufflinks 38.127     High  
cufflinks 55.837     High  

0 Strain