Gene : LIN2 A. thaliana TAIR10
Primary Identifier:  ? AT1G03475 Defline:  (1 of 1) PTHR10755//PTHR10755:SF7 - COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL // SUBFAMILY NOT NAMED
Genomic Order:  264 Name:  ? AT1G03475
Secondary Identifier:  ? PAC:19656950
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CHLOROPHYLL-SYN Arabidopsis thaliana pathologic  
Athaliana HEME-BIOSYNTHESIS-II Arabidopsis thaliana pathologic  
Athaliana PWY-5918 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G03475 0.5kb upstream 0.5kb upstream 2661 true Chr1: 869051-871711 Arabidopsis thaliana
AT1G03475 0.5kb upstream 0.5kb upstream 500 false Chr1: 871212-871711 Arabidopsis thaliana
AT1G03475 0.5kb downstream 0.5kb downstream 2661 true Chr1: 868551-871211 Arabidopsis thaliana
AT1G03475 0.5kb downstream 0.5kb downstream 500 false Chr1: 868551-869050 Arabidopsis thaliana
AT1G03475 1.0kb upstream 1.0kb upstream 3161 true Chr1: 869051-872211 Arabidopsis thaliana
AT1G03475 1.0kb upstream 1.0kb upstream 1000 false Chr1: 871212-872211 Arabidopsis thaliana
AT1G03475 1.0kb downstream 1.0kb downstream 3161 true Chr1: 868051-871211 Arabidopsis thaliana
AT1G03475 1.0kb downstream 1.0kb downstream 1000 false Chr1: 868051-869050 Arabidopsis thaliana
AT1G03475 2.0kb upstream 2.0kb upstream 4161 true Chr1: 869051-873211 Arabidopsis thaliana
AT1G03475 2.0kb upstream 2.0kb upstream 2000 false Chr1: 871212-873211 Arabidopsis thaliana
AT1G03475 2.0kb downstream 2.0kb downstream 4161 true Chr1: 867051-871211 Arabidopsis thaliana
AT1G03475 2.0kb downstream 2.0kb downstream 2000 false Chr1: 867051-869050 Arabidopsis thaliana
AT1G03475 5.0kb upstream 5.0kb upstream 7161 true Chr1: 869051-876211 Arabidopsis thaliana
AT1G03475 5.0kb upstream 5.0kb upstream 5000 false Chr1: 871212-876211 Arabidopsis thaliana
AT1G03475 5.0kb downstream 5.0kb downstream 7161 true Chr1: 864051-871211 Arabidopsis thaliana
AT1G03475 5.0kb downstream 5.0kb downstream 5000 false Chr1: 864051-869050 Arabidopsis thaliana
AT1G03475 10.0kb upstream 10.0kb upstream 12161 true Chr1: 869051-881211 Arabidopsis thaliana
AT1G03475 10.0kb upstream 10.0kb upstream 10000 false Chr1: 871212-881211 Arabidopsis thaliana
AT1G03475 10.0kb downstream 10.0kb downstream 12161 true Chr1: 859051-871211 Arabidopsis thaliana
AT1G03475 10.0kb downstream 10.0kb downstream 10000 false Chr1: 859051-869050 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367913 5261 Brassicaceae View MSA
123838034 5264 Brassicales-Malvales View MSA
124337231 5266 SBM View MSA
124243280 5268 Malvidae View MSA
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.027     High  
cufflinks 13.583        
cufflinks 109.73     High  
cufflinks 14.673        
cufflinks 89.177     High  
cufflinks 13.147        

0 Strain