Gene : AT1G02150 A. thaliana TAIR10
Defline:  (1 of 14) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  122
Name:  ? AT1G02150 Secondary Identifier:  ? PAC:19650993
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G02150 0.5kb upstream 0.5kb upstream 2490 true Chr1: 408122-410611 Arabidopsis thaliana
AT1G02150 0.5kb upstream 0.5kb upstream 500 false Chr1: 408122-408621 Arabidopsis thaliana
AT1G02150 0.5kb downstream 0.5kb downstream 2490 true Chr1: 408622-411111 Arabidopsis thaliana
AT1G02150 0.5kb downstream 0.5kb downstream 500 false Chr1: 410612-411111 Arabidopsis thaliana
AT1G02150 1.0kb upstream 1.0kb upstream 2990 true Chr1: 407622-410611 Arabidopsis thaliana
AT1G02150 1.0kb upstream 1.0kb upstream 1000 false Chr1: 407622-408621 Arabidopsis thaliana
AT1G02150 1.0kb downstream 1.0kb downstream 2990 true Chr1: 408622-411611 Arabidopsis thaliana
AT1G02150 1.0kb downstream 1.0kb downstream 1000 false Chr1: 410612-411611 Arabidopsis thaliana
AT1G02150 2.0kb upstream 2.0kb upstream 3990 true Chr1: 406622-410611 Arabidopsis thaliana
AT1G02150 2.0kb upstream 2.0kb upstream 2000 false Chr1: 406622-408621 Arabidopsis thaliana
AT1G02150 2.0kb downstream 2.0kb downstream 3990 true Chr1: 408622-412611 Arabidopsis thaliana
AT1G02150 2.0kb downstream 2.0kb downstream 2000 false Chr1: 410612-412611 Arabidopsis thaliana
AT1G02150 5.0kb upstream 5.0kb upstream 6990 true Chr1: 403622-410611 Arabidopsis thaliana
AT1G02150 5.0kb upstream 5.0kb upstream 5000 false Chr1: 403622-408621 Arabidopsis thaliana
AT1G02150 5.0kb downstream 5.0kb downstream 6990 true Chr1: 408622-415611 Arabidopsis thaliana
AT1G02150 5.0kb downstream 5.0kb downstream 5000 false Chr1: 410612-415611 Arabidopsis thaliana
AT1G02150 10.0kb upstream 10.0kb upstream 11990 true Chr1: 398622-410611 Arabidopsis thaliana
AT1G02150 10.0kb upstream 10.0kb upstream 10000 false Chr1: 398622-408621 Arabidopsis thaliana
AT1G02150 10.0kb downstream 10.0kb downstream 11990 true Chr1: 408622-420611 Arabidopsis thaliana
AT1G02150 10.0kb downstream 10.0kb downstream 10000 false Chr1: 410612-420611 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374410 5261 Brassicaceae View MSA
123832410 5264 Brassicales-Malvales View MSA
124343408 5266 SBM View MSA
124244943 5268 Malvidae View MSA
124062625 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.938     High  
cufflinks 11.935        
cufflinks 60.771     High High
cufflinks 12.246        
cufflinks 50.688     High  
cufflinks 10.699       Low

0 Strain