Gene : AT1G27330 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15601//PTHR15601:SF4 - STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4 // SUBFAMILY NOT NAMED Genomic Order:  2708
Name:  ? AT1G27330 Secondary Identifier:  ? PAC:19655649
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27330 0.5kb upstream 0.5kb upstream 1606 true Chr1: 9492464-9494069 Arabidopsis thaliana
AT1G27330 0.5kb upstream 0.5kb upstream 500 false Chr1: 9492464-9492963 Arabidopsis thaliana
AT1G27330 0.5kb downstream 0.5kb downstream 1606 true Chr1: 9492964-9494569 Arabidopsis thaliana
AT1G27330 0.5kb downstream 0.5kb downstream 500 false Chr1: 9494070-9494569 Arabidopsis thaliana
AT1G27330 1.0kb upstream 1.0kb upstream 2106 true Chr1: 9491964-9494069 Arabidopsis thaliana
AT1G27330 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9491964-9492963 Arabidopsis thaliana
AT1G27330 1.0kb downstream 1.0kb downstream 2106 true Chr1: 9492964-9495069 Arabidopsis thaliana
AT1G27330 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9494070-9495069 Arabidopsis thaliana
AT1G27330 2.0kb upstream 2.0kb upstream 3106 true Chr1: 9490964-9494069 Arabidopsis thaliana
AT1G27330 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9490964-9492963 Arabidopsis thaliana
AT1G27330 2.0kb downstream 2.0kb downstream 3106 true Chr1: 9492964-9496069 Arabidopsis thaliana
AT1G27330 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9494070-9496069 Arabidopsis thaliana
AT1G27330 5.0kb upstream 5.0kb upstream 6106 true Chr1: 9487964-9494069 Arabidopsis thaliana
AT1G27330 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9487964-9492963 Arabidopsis thaliana
AT1G27330 5.0kb downstream 5.0kb downstream 6106 true Chr1: 9492964-9499069 Arabidopsis thaliana
AT1G27330 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9494070-9499069 Arabidopsis thaliana
AT1G27330 10.0kb upstream 10.0kb upstream 11106 true Chr1: 9482964-9494069 Arabidopsis thaliana
AT1G27330 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9482964-9492963 Arabidopsis thaliana
AT1G27330 10.0kb downstream 10.0kb downstream 11106 true Chr1: 9492964-9504069 Arabidopsis thaliana
AT1G27330 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9494070-9504069 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381593 5261 Brassicaceae View MSA
123829697 5264 Brassicales-Malvales View MSA
124340832 5266 SBM View MSA
124244099 5268 Malvidae View MSA
124071023 5270 Rosid View MSA
123745695 5271 Pentapetalae View MSA
122795442 5272 Eudicot View MSA
122050162 5273 Angiosperm View MSA
121345372 5274 Embryophyte View MSA
123428764 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 92.899     High High
cufflinks 60.175     High  
cufflinks 44.399     High Low
cufflinks 65.146     High  
cufflinks 49.315     High  
cufflinks 78.744     High  

0 Strain