Gene : AT1G80780 A. thaliana TAIR10
Defline:  (1 of 11) K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Genomic Order:  7056
Name:  ? AT1G80780 Secondary Identifier:  ? PAC:19656402
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80780 0.5kb upstream 0.5kb upstream 1992 true Chr1: 30357615-30359606 Arabidopsis thaliana
AT1G80780 0.5kb upstream 0.5kb upstream 500 false Chr1: 30357615-30358114 Arabidopsis thaliana
AT1G80780 0.5kb downstream 0.5kb downstream 1992 true Chr1: 30358115-30360106 Arabidopsis thaliana
AT1G80780 0.5kb downstream 0.5kb downstream 500 false Chr1: 30359607-30360106 Arabidopsis thaliana
AT1G80780 1.0kb upstream 1.0kb upstream 2492 true Chr1: 30357115-30359606 Arabidopsis thaliana
AT1G80780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30357115-30358114 Arabidopsis thaliana
AT1G80780 1.0kb downstream 1.0kb downstream 2492 true Chr1: 30358115-30360606 Arabidopsis thaliana
AT1G80780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30359607-30360606 Arabidopsis thaliana
AT1G80780 2.0kb upstream 2.0kb upstream 3492 true Chr1: 30356115-30359606 Arabidopsis thaliana
AT1G80780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30356115-30358114 Arabidopsis thaliana
AT1G80780 2.0kb downstream 2.0kb downstream 3492 true Chr1: 30358115-30361606 Arabidopsis thaliana
AT1G80780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30359607-30361606 Arabidopsis thaliana
AT1G80780 5.0kb upstream 5.0kb upstream 6492 true Chr1: 30353115-30359606 Arabidopsis thaliana
AT1G80780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30353115-30358114 Arabidopsis thaliana
AT1G80780 5.0kb downstream 5.0kb downstream 6492 true Chr1: 30358115-30364606 Arabidopsis thaliana
AT1G80780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30359607-30364606 Arabidopsis thaliana
AT1G80780 10.0kb upstream 10.0kb upstream 11492 true Chr1: 30348115-30359606 Arabidopsis thaliana
AT1G80780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30348115-30358114 Arabidopsis thaliana
AT1G80780 10.0kb downstream 10.0kb downstream 11492 true Chr1: 30358115-30369606 Arabidopsis thaliana
AT1G80780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30359607-30369606 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378934 5261 Brassicaceae View MSA
123837045 5264 Brassicales-Malvales View MSA
124344697 5266 SBM View MSA
124249761 5268 Malvidae View MSA
124069772 5270 Rosid View MSA
123751121 5271 Pentapetalae View MSA
122791154 5272 Eudicot View MSA
122043623 5273 Angiosperm View MSA
123429113 5275 Viridiplantae View MSA
121348051 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.461       Low
cufflinks 21.664        
cufflinks 13.431        
cufflinks 24.818       High
cufflinks 14.412        
cufflinks 17.04        

0 Strain