Gene : HA9 A. thaliana TAIR10
Primary Identifier:  ? AT1G80660 Defline:  (1 of 6) PTHR24093:SF355 - ATPASE 1, PLASMA MEMBRANE-TYPE-RELATED
Genomic Order:  7043 Name:  ? AT1G80660
Secondary Identifier:  ? PAC:19653643
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80660 0.5kb upstream 0.5kb upstream 4672 true Chr1: 30316026-30320697 Arabidopsis thaliana
AT1G80660 0.5kb upstream 0.5kb upstream 500 false Chr1: 30320198-30320697 Arabidopsis thaliana
AT1G80660 0.5kb downstream 0.5kb downstream 4672 true Chr1: 30315526-30320197 Arabidopsis thaliana
AT1G80660 0.5kb downstream 0.5kb downstream 500 false Chr1: 30315526-30316025 Arabidopsis thaliana
AT1G80660 1.0kb upstream 1.0kb upstream 5172 true Chr1: 30316026-30321197 Arabidopsis thaliana
AT1G80660 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30320198-30321197 Arabidopsis thaliana
AT1G80660 1.0kb downstream 1.0kb downstream 5172 true Chr1: 30315026-30320197 Arabidopsis thaliana
AT1G80660 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30315026-30316025 Arabidopsis thaliana
AT1G80660 2.0kb upstream 2.0kb upstream 6172 true Chr1: 30316026-30322197 Arabidopsis thaliana
AT1G80660 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30320198-30322197 Arabidopsis thaliana
AT1G80660 2.0kb downstream 2.0kb downstream 6172 true Chr1: 30314026-30320197 Arabidopsis thaliana
AT1G80660 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30314026-30316025 Arabidopsis thaliana
AT1G80660 5.0kb upstream 5.0kb upstream 9172 true Chr1: 30316026-30325197 Arabidopsis thaliana
AT1G80660 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30320198-30325197 Arabidopsis thaliana
AT1G80660 5.0kb downstream 5.0kb downstream 9172 true Chr1: 30311026-30320197 Arabidopsis thaliana
AT1G80660 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30311026-30316025 Arabidopsis thaliana
AT1G80660 10.0kb upstream 10.0kb upstream 14172 true Chr1: 30316026-30330197 Arabidopsis thaliana
AT1G80660 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30320198-30330197 Arabidopsis thaliana
AT1G80660 10.0kb downstream 10.0kb downstream 14172 true Chr1: 30306026-30320197 Arabidopsis thaliana
AT1G80660 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30306026-30316025 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375374 5261 Brassicaceae View MSA
123835277 5264 Brassicales-Malvales View MSA
124339261 5266 SBM View MSA
124250534 5268 Malvidae View MSA
124070972 5270 Rosid View MSA
123741825 5271 Pentapetalae View MSA
122796712 5272 Eudicot View MSA
122050656 5273 Angiosperm View MSA
121349531 5274 Embryophyte View MSA
123428375 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.022     Low  
cufflinks 0.073     Low  
cufflinks 0.004     Low Low
cufflinks 0.04     Low  
cufflinks 0.022     Low  
cufflinks 0.068     Low  

0 Strain