Gene : RTL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G80650 Defline:  (1 of 5) PF14709 - double strand RNA binding domain from DEAD END PROTEIN 1 (DND1_DSRM)
Genomic Order:  7042 Name:  ? AT1G80650
Secondary Identifier:  ? PAC:19656861
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80650 0.5kb upstream 0.5kb upstream 1784 true Chr1: 30314036-30315819 Arabidopsis thaliana
AT1G80650 0.5kb upstream 0.5kb upstream 500 false Chr1: 30314036-30314535 Arabidopsis thaliana
AT1G80650 0.5kb downstream 0.5kb downstream 1784 true Chr1: 30314536-30316319 Arabidopsis thaliana
AT1G80650 0.5kb downstream 0.5kb downstream 500 false Chr1: 30315820-30316319 Arabidopsis thaliana
AT1G80650 1.0kb upstream 1.0kb upstream 2284 true Chr1: 30313536-30315819 Arabidopsis thaliana
AT1G80650 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30313536-30314535 Arabidopsis thaliana
AT1G80650 1.0kb downstream 1.0kb downstream 2284 true Chr1: 30314536-30316819 Arabidopsis thaliana
AT1G80650 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30315820-30316819 Arabidopsis thaliana
AT1G80650 2.0kb upstream 2.0kb upstream 3284 true Chr1: 30312536-30315819 Arabidopsis thaliana
AT1G80650 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30312536-30314535 Arabidopsis thaliana
AT1G80650 2.0kb downstream 2.0kb downstream 3284 true Chr1: 30314536-30317819 Arabidopsis thaliana
AT1G80650 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30315820-30317819 Arabidopsis thaliana
AT1G80650 5.0kb upstream 5.0kb upstream 6284 true Chr1: 30309536-30315819 Arabidopsis thaliana
AT1G80650 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30309536-30314535 Arabidopsis thaliana
AT1G80650 5.0kb downstream 5.0kb downstream 6284 true Chr1: 30314536-30320819 Arabidopsis thaliana
AT1G80650 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30315820-30320819 Arabidopsis thaliana
AT1G80650 10.0kb upstream 10.0kb upstream 11284 true Chr1: 30304536-30315819 Arabidopsis thaliana
AT1G80650 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30304536-30314535 Arabidopsis thaliana
AT1G80650 10.0kb downstream 10.0kb downstream 11284 true Chr1: 30314536-30325819 Arabidopsis thaliana
AT1G80650 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30315820-30325819 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028050 5273 Angiosperm View MSA
122368695 5261 Brassicaceae View MSA
123830239 5264 Brassicales-Malvales View MSA
124340577 5266 SBM View MSA
124244744 5268 Malvidae View MSA
124050463 5270 Rosid View MSA
123746179 5271 Pentapetalae View MSA
122771807 5272 Eudicot View MSA
121297597 5274 Embryophyte View MSA
123335637 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.286        
cufflinks 4.028        
cufflinks 12.751        
cufflinks 3.505        
cufflinks 13.945        
cufflinks 1.982       Low

0 Strain