Gene : SAR3 A. thaliana TAIR10
Primary Identifier:  ? AT1G80680 Defline:  (1 of 1) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG
Genomic Order:  7045 Name:  ? AT1G80680
Secondary Identifier:  ? PAC:19649317
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80680 0.5kb upstream 0.5kb upstream 5262 true Chr1: 30323508-30328769 Arabidopsis thaliana
AT1G80680 0.5kb upstream 0.5kb upstream 500 false Chr1: 30323508-30324007 Arabidopsis thaliana
AT1G80680 0.5kb downstream 0.5kb downstream 5262 true Chr1: 30324008-30329269 Arabidopsis thaliana
AT1G80680 0.5kb downstream 0.5kb downstream 500 false Chr1: 30328770-30329269 Arabidopsis thaliana
AT1G80680 1.0kb upstream 1.0kb upstream 5762 true Chr1: 30323008-30328769 Arabidopsis thaliana
AT1G80680 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30323008-30324007 Arabidopsis thaliana
AT1G80680 1.0kb downstream 1.0kb downstream 5762 true Chr1: 30324008-30329769 Arabidopsis thaliana
AT1G80680 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30328770-30329769 Arabidopsis thaliana
AT1G80680 2.0kb upstream 2.0kb upstream 6762 true Chr1: 30322008-30328769 Arabidopsis thaliana
AT1G80680 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30322008-30324007 Arabidopsis thaliana
AT1G80680 2.0kb downstream 2.0kb downstream 6762 true Chr1: 30324008-30330769 Arabidopsis thaliana
AT1G80680 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30328770-30330769 Arabidopsis thaliana
AT1G80680 5.0kb upstream 5.0kb upstream 9762 true Chr1: 30319008-30328769 Arabidopsis thaliana
AT1G80680 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30319008-30324007 Arabidopsis thaliana
AT1G80680 5.0kb downstream 5.0kb downstream 9762 true Chr1: 30324008-30333769 Arabidopsis thaliana
AT1G80680 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30328770-30333769 Arabidopsis thaliana
AT1G80680 10.0kb upstream 10.0kb upstream 14762 true Chr1: 30314008-30328769 Arabidopsis thaliana
AT1G80680 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30314008-30324007 Arabidopsis thaliana
AT1G80680 10.0kb downstream 10.0kb downstream 14762 true Chr1: 30324008-30338769 Arabidopsis thaliana
AT1G80680 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30328770-30338769 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360570 5261 Brassicaceae View MSA
123833721 5264 Brassicales-Malvales View MSA
124337960 5266 SBM View MSA
124238103 5268 Malvidae View MSA
124062118 5270 Rosid View MSA
123738828 5271 Pentapetalae View MSA
122786921 5272 Eudicot View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.858       Low
cufflinks 15.114        
cufflinks 11.087        
cufflinks 15.523       High
cufflinks 11.908        
cufflinks 14.444        

0 Strain