Gene : AT1G80450 A. thaliana TAIR10
Defline:  (1 of 32) PF05678 - VQ motif (VQ) Genomic Order:  7021
Name:  ? AT1G80450 Secondary Identifier:  ? PAC:19656863
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80450 0.5kb upstream 0.5kb upstream 1354 true Chr1: 30243930-30245283 Arabidopsis thaliana
AT1G80450 0.5kb upstream 0.5kb upstream 500 false Chr1: 30244784-30245283 Arabidopsis thaliana
AT1G80450 0.5kb downstream 0.5kb downstream 1354 true Chr1: 30243430-30244783 Arabidopsis thaliana
AT1G80450 0.5kb downstream 0.5kb downstream 500 false Chr1: 30243430-30243929 Arabidopsis thaliana
AT1G80450 1.0kb upstream 1.0kb upstream 1854 true Chr1: 30243930-30245783 Arabidopsis thaliana
AT1G80450 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30244784-30245783 Arabidopsis thaliana
AT1G80450 1.0kb downstream 1.0kb downstream 1854 true Chr1: 30242930-30244783 Arabidopsis thaliana
AT1G80450 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30242930-30243929 Arabidopsis thaliana
AT1G80450 2.0kb upstream 2.0kb upstream 2854 true Chr1: 30243930-30246783 Arabidopsis thaliana
AT1G80450 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30244784-30246783 Arabidopsis thaliana
AT1G80450 2.0kb downstream 2.0kb downstream 2854 true Chr1: 30241930-30244783 Arabidopsis thaliana
AT1G80450 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30241930-30243929 Arabidopsis thaliana
AT1G80450 5.0kb upstream 5.0kb upstream 5854 true Chr1: 30243930-30249783 Arabidopsis thaliana
AT1G80450 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30244784-30249783 Arabidopsis thaliana
AT1G80450 5.0kb downstream 5.0kb downstream 5854 true Chr1: 30238930-30244783 Arabidopsis thaliana
AT1G80450 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30238930-30243929 Arabidopsis thaliana
AT1G80450 10.0kb upstream 10.0kb upstream 10854 true Chr1: 30243930-30254783 Arabidopsis thaliana
AT1G80450 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30244784-30254783 Arabidopsis thaliana
AT1G80450 10.0kb downstream 10.0kb downstream 10854 true Chr1: 30233930-30244783 Arabidopsis thaliana
AT1G80450 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30233930-30243929 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381558 5261 Brassicaceae View MSA
123828688 5264 Brassicales-Malvales View MSA
124343024 5266 SBM View MSA
124247497 5268 Malvidae View MSA
124071796 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.308        
cufflinks 1.884       Low
cufflinks 2.758        
cufflinks 2.049        
cufflinks 3.604       High
cufflinks 2.437        

0 Strain