Gene : AT1G80555 A. thaliana TAIR10
Defline:  (1 of 5) 1.1.1.85 - 3-isopropylmalate dehydrogenase / IMDH Genomic Order:  7032
Name:  ? AT1G80555 Secondary Identifier:  ? PAC:19655803
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana LEUSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80555 0.5kb upstream 0.5kb upstream 1286 true Chr1: 30286456-30287741 Arabidopsis thaliana
AT1G80555 0.5kb upstream 0.5kb upstream 500 false Chr1: 30286456-30286955 Arabidopsis thaliana
AT1G80555 0.5kb downstream 0.5kb downstream 1286 true Chr1: 30286956-30288241 Arabidopsis thaliana
AT1G80555 0.5kb downstream 0.5kb downstream 500 false Chr1: 30287742-30288241 Arabidopsis thaliana
AT1G80555 1.0kb upstream 1.0kb upstream 1786 true Chr1: 30285956-30287741 Arabidopsis thaliana
AT1G80555 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30285956-30286955 Arabidopsis thaliana
AT1G80555 1.0kb downstream 1.0kb downstream 1786 true Chr1: 30286956-30288741 Arabidopsis thaliana
AT1G80555 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30287742-30288741 Arabidopsis thaliana
AT1G80555 2.0kb upstream 2.0kb upstream 2786 true Chr1: 30284956-30287741 Arabidopsis thaliana
AT1G80555 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30284956-30286955 Arabidopsis thaliana
AT1G80555 2.0kb downstream 2.0kb downstream 2786 true Chr1: 30286956-30289741 Arabidopsis thaliana
AT1G80555 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30287742-30289741 Arabidopsis thaliana
AT1G80555 5.0kb upstream 5.0kb upstream 5786 true Chr1: 30281956-30287741 Arabidopsis thaliana
AT1G80555 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30281956-30286955 Arabidopsis thaliana
AT1G80555 5.0kb downstream 5.0kb downstream 5786 true Chr1: 30286956-30292741 Arabidopsis thaliana
AT1G80555 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30287742-30292741 Arabidopsis thaliana
AT1G80555 10.0kb upstream 10.0kb upstream 10786 true Chr1: 30276956-30287741 Arabidopsis thaliana
AT1G80555 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30276956-30286955 Arabidopsis thaliana
AT1G80555 10.0kb downstream 10.0kb downstream 10786 true Chr1: 30286956-30297741 Arabidopsis thaliana
AT1G80555 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30287742-30297741 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121493499 5273 Angiosperm Singleton cluster - no MSA
122328881 5261 Brassicaceae Singleton cluster - no MSA
123770209 5264 Brassicales-Malvales Singleton cluster - no MSA
124268752 5266 SBM Singleton cluster - no MSA
124124933 5268 Malvidae Singleton cluster - no MSA
123853931 5270 Rosid Singleton cluster - no MSA
123439968 5271 Pentapetalae Singleton cluster - no MSA
122475558 5272 Eudicot Singleton cluster - no MSA
120766873 5274 Embryophyte Singleton cluster - no MSA
122809271 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.308        
cufflinks 0.194     Low Low
cufflinks 0.666        
cufflinks 0.441        
cufflinks 0.798       High
cufflinks 0.204     Low Low

0 Strain