Gene : AT1G80520 A. thaliana TAIR10
Defline:  (1 of 6) PF07647 - SAM domain (Sterile alpha motif) (SAM_2) Genomic Order:  7028
Name:  ? AT1G80520 Secondary Identifier:  ? PAC:19656936
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80520 0.5kb upstream 0.5kb upstream 1079 true Chr1: 30275981-30277059 Arabidopsis thaliana
AT1G80520 0.5kb upstream 0.5kb upstream 500 false Chr1: 30275981-30276480 Arabidopsis thaliana
AT1G80520 0.5kb downstream 0.5kb downstream 1079 true Chr1: 30276481-30277559 Arabidopsis thaliana
AT1G80520 0.5kb downstream 0.5kb downstream 500 false Chr1: 30277060-30277559 Arabidopsis thaliana
AT1G80520 1.0kb upstream 1.0kb upstream 1579 true Chr1: 30275481-30277059 Arabidopsis thaliana
AT1G80520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30275481-30276480 Arabidopsis thaliana
AT1G80520 1.0kb downstream 1.0kb downstream 1579 true Chr1: 30276481-30278059 Arabidopsis thaliana
AT1G80520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30277060-30278059 Arabidopsis thaliana
AT1G80520 2.0kb upstream 2.0kb upstream 2579 true Chr1: 30274481-30277059 Arabidopsis thaliana
AT1G80520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30274481-30276480 Arabidopsis thaliana
AT1G80520 2.0kb downstream 2.0kb downstream 2579 true Chr1: 30276481-30279059 Arabidopsis thaliana
AT1G80520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30277060-30279059 Arabidopsis thaliana
AT1G80520 5.0kb upstream 5.0kb upstream 5579 true Chr1: 30271481-30277059 Arabidopsis thaliana
AT1G80520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30271481-30276480 Arabidopsis thaliana
AT1G80520 5.0kb downstream 5.0kb downstream 5579 true Chr1: 30276481-30282059 Arabidopsis thaliana
AT1G80520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30277060-30282059 Arabidopsis thaliana
AT1G80520 10.0kb upstream 10.0kb upstream 10579 true Chr1: 30266481-30277059 Arabidopsis thaliana
AT1G80520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30266481-30276480 Arabidopsis thaliana
AT1G80520 10.0kb downstream 10.0kb downstream 10579 true Chr1: 30276481-30287059 Arabidopsis thaliana
AT1G80520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30277060-30287059 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373161 5261 Brassicaceae View MSA
123839675 5264 Brassicales-Malvales View MSA
124344189 5266 SBM View MSA
124242329 5268 Malvidae View MSA
124063066 5270 Rosid View MSA
123745428 5271 Pentapetalae View MSA
122789154 5272 Eudicot View MSA
122048035 5273 Angiosperm View MSA
121310835 5274 Embryophyte View MSA
123348222 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.872        
cufflinks 10.254        
cufflinks 1.902        
cufflinks 10.912       High
cufflinks 1.589       Low
cufflinks 8.257        

0 Strain