Gene : HDA08 A. thaliana TAIR10
Primary Identifier:  ? AT1G08460 Defline:  (1 of 1) PTHR10625:SF121 - HISTONE DEACETYLASE 8
Genomic Order:  795 Name:  ? AT1G08460
Secondary Identifier:  ? PAC:19649360
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08460 0.5kb upstream 0.5kb upstream 2678 true Chr1: 2671951-2674628 Arabidopsis thaliana
AT1G08460 0.5kb upstream 0.5kb upstream 500 false Chr1: 2671951-2672450 Arabidopsis thaliana
AT1G08460 0.5kb downstream 0.5kb downstream 2678 true Chr1: 2672451-2675128 Arabidopsis thaliana
AT1G08460 0.5kb downstream 0.5kb downstream 500 false Chr1: 2674629-2675128 Arabidopsis thaliana
AT1G08460 1.0kb upstream 1.0kb upstream 3178 true Chr1: 2671451-2674628 Arabidopsis thaliana
AT1G08460 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2671451-2672450 Arabidopsis thaliana
AT1G08460 1.0kb downstream 1.0kb downstream 3178 true Chr1: 2672451-2675628 Arabidopsis thaliana
AT1G08460 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2674629-2675628 Arabidopsis thaliana
AT1G08460 2.0kb upstream 2.0kb upstream 4178 true Chr1: 2670451-2674628 Arabidopsis thaliana
AT1G08460 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2670451-2672450 Arabidopsis thaliana
AT1G08460 2.0kb downstream 2.0kb downstream 4178 true Chr1: 2672451-2676628 Arabidopsis thaliana
AT1G08460 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2674629-2676628 Arabidopsis thaliana
AT1G08460 5.0kb upstream 5.0kb upstream 7178 true Chr1: 2667451-2674628 Arabidopsis thaliana
AT1G08460 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2667451-2672450 Arabidopsis thaliana
AT1G08460 5.0kb downstream 5.0kb downstream 7178 true Chr1: 2672451-2679628 Arabidopsis thaliana
AT1G08460 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2674629-2679628 Arabidopsis thaliana
AT1G08460 10.0kb upstream 10.0kb upstream 12178 true Chr1: 2662451-2674628 Arabidopsis thaliana
AT1G08460 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2662451-2672450 Arabidopsis thaliana
AT1G08460 10.0kb downstream 10.0kb downstream 12178 true Chr1: 2672451-2684628 Arabidopsis thaliana
AT1G08460 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2674629-2684628 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362711 5261 Brassicaceae View MSA
123835363 5264 Brassicales-Malvales View MSA
124341397 5266 SBM View MSA
124237256 5268 Malvidae View MSA
124068185 5270 Rosid View MSA
123739606 5271 Pentapetalae View MSA
122786493 5272 Eudicot View MSA
122051091 5273 Angiosperm View MSA
121349302 5274 Embryophyte View MSA
123428156 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.18        
cufflinks 13.561        
cufflinks 11.776        
cufflinks 13.374        
cufflinks 15.312       High
cufflinks 10.587       Low

0 Strain