Gene : STN1 A. thaliana TAIR10
Primary Identifier:  ? AT1G07130 Defline:  (1 of 16) PF01336 - OB-fold nucleic acid binding domain (tRNA_anti-codon)
Genomic Order:  645 Name:  ? AT1G07130
Secondary Identifier:  ? PAC:19650382
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G07130 0.5kb upstream 0.5kb upstream 1458 true Chr1: 2187276-2188733 Arabidopsis thaliana
AT1G07130 0.5kb upstream 0.5kb upstream 500 false Chr1: 2187276-2187775 Arabidopsis thaliana
AT1G07130 0.5kb downstream 0.5kb downstream 1458 true Chr1: 2187776-2189233 Arabidopsis thaliana
AT1G07130 0.5kb downstream 0.5kb downstream 500 false Chr1: 2188734-2189233 Arabidopsis thaliana
AT1G07130 1.0kb upstream 1.0kb upstream 1958 true Chr1: 2186776-2188733 Arabidopsis thaliana
AT1G07130 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2186776-2187775 Arabidopsis thaliana
AT1G07130 1.0kb downstream 1.0kb downstream 1958 true Chr1: 2187776-2189733 Arabidopsis thaliana
AT1G07130 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2188734-2189733 Arabidopsis thaliana
AT1G07130 2.0kb upstream 2.0kb upstream 2958 true Chr1: 2185776-2188733 Arabidopsis thaliana
AT1G07130 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2185776-2187775 Arabidopsis thaliana
AT1G07130 2.0kb downstream 2.0kb downstream 2958 true Chr1: 2187776-2190733 Arabidopsis thaliana
AT1G07130 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2188734-2190733 Arabidopsis thaliana
AT1G07130 5.0kb upstream 5.0kb upstream 5958 true Chr1: 2182776-2188733 Arabidopsis thaliana
AT1G07130 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2182776-2187775 Arabidopsis thaliana
AT1G07130 5.0kb downstream 5.0kb downstream 5958 true Chr1: 2187776-2193733 Arabidopsis thaliana
AT1G07130 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2188734-2193733 Arabidopsis thaliana
AT1G07130 10.0kb upstream 10.0kb upstream 10958 true Chr1: 2177776-2188733 Arabidopsis thaliana
AT1G07130 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2177776-2187775 Arabidopsis thaliana
AT1G07130 10.0kb downstream 10.0kb downstream 10958 true Chr1: 2187776-2198733 Arabidopsis thaliana
AT1G07130 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2188734-2198733 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368099 5261 Brassicaceae View MSA
123829040 5264 Brassicales-Malvales View MSA
124346592 5266 SBM View MSA
124244081 5268 Malvidae View MSA
124067741 5270 Rosid View MSA
123737175 5271 Pentapetalae View MSA
122786413 5272 Eudicot View MSA
122044102 5273 Angiosperm View MSA
121345132 5274 Embryophyte View MSA
123425190 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.549       Low
cufflinks 4.263        
cufflinks 1.938        
cufflinks 4.783       High
cufflinks 1.779        
cufflinks 3.162        

0 Strain