Gene : AT1G05770 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23244:SF249 - MANNOSE-BINDING LECTIN SUPERFAMILY PROTEIN Genomic Order:  504
Name:  ? AT1G05770 Secondary Identifier:  ? PAC:19655046
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05770 0.5kb upstream 0.5kb upstream 1396 true Chr1: 1725388-1726783 Arabidopsis thaliana
AT1G05770 0.5kb upstream 0.5kb upstream 500 false Chr1: 1726284-1726783 Arabidopsis thaliana
AT1G05770 0.5kb downstream 0.5kb downstream 1396 true Chr1: 1724888-1726283 Arabidopsis thaliana
AT1G05770 0.5kb downstream 0.5kb downstream 500 false Chr1: 1724888-1725387 Arabidopsis thaliana
AT1G05770 1.0kb upstream 1.0kb upstream 1896 true Chr1: 1725388-1727283 Arabidopsis thaliana
AT1G05770 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1726284-1727283 Arabidopsis thaliana
AT1G05770 1.0kb downstream 1.0kb downstream 1896 true Chr1: 1724388-1726283 Arabidopsis thaliana
AT1G05770 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1724388-1725387 Arabidopsis thaliana
AT1G05770 2.0kb upstream 2.0kb upstream 2896 true Chr1: 1725388-1728283 Arabidopsis thaliana
AT1G05770 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1726284-1728283 Arabidopsis thaliana
AT1G05770 2.0kb downstream 2.0kb downstream 2896 true Chr1: 1723388-1726283 Arabidopsis thaliana
AT1G05770 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1723388-1725387 Arabidopsis thaliana
AT1G05770 5.0kb upstream 5.0kb upstream 5896 true Chr1: 1725388-1731283 Arabidopsis thaliana
AT1G05770 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1726284-1731283 Arabidopsis thaliana
AT1G05770 5.0kb downstream 5.0kb downstream 5896 true Chr1: 1720388-1726283 Arabidopsis thaliana
AT1G05770 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1720388-1725387 Arabidopsis thaliana
AT1G05770 10.0kb upstream 10.0kb upstream 10896 true Chr1: 1725388-1736283 Arabidopsis thaliana
AT1G05770 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1726284-1736283 Arabidopsis thaliana
AT1G05770 10.0kb downstream 10.0kb downstream 10896 true Chr1: 1715388-1726283 Arabidopsis thaliana
AT1G05770 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1715388-1725387 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344187 5261 Brassicaceae View MSA
123784228 5264 Brassicales-Malvales View MSA
124282424 5266 SBM View MSA
124250356 5268 Malvidae View MSA
123952494 5270 Rosid View MSA
123753130 5271 Pentapetalae View MSA
122797480 5272 Eudicot View MSA
122051624 5273 Angiosperm View MSA
121351046 5274 Embryophyte View MSA
123381988 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.855        
cufflinks 11.764       High
cufflinks 0.664        
cufflinks 7.67        
cufflinks 0.466       Low
cufflinks 10.508        

0 Strain