Gene : AT1G05805 A. thaliana TAIR10
Defline:  (1 of 2) PTHR16223:SF10 - TRANSCRIPTION FACTOR BHLH128-RELATED Genomic Order:  509
Name:  ? AT1G05805 Secondary Identifier:  ? PAC:19651851
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05805 0.5kb upstream 0.5kb upstream 3421 true Chr1: 1744273-1747693 Arabidopsis thaliana
AT1G05805 0.5kb upstream 0.5kb upstream 500 false Chr1: 1744273-1744772 Arabidopsis thaliana
AT1G05805 0.5kb downstream 0.5kb downstream 3421 true Chr1: 1744773-1748193 Arabidopsis thaliana
AT1G05805 0.5kb downstream 0.5kb downstream 500 false Chr1: 1747694-1748193 Arabidopsis thaliana
AT1G05805 1.0kb upstream 1.0kb upstream 3921 true Chr1: 1743773-1747693 Arabidopsis thaliana
AT1G05805 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1743773-1744772 Arabidopsis thaliana
AT1G05805 1.0kb downstream 1.0kb downstream 3921 true Chr1: 1744773-1748693 Arabidopsis thaliana
AT1G05805 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1747694-1748693 Arabidopsis thaliana
AT1G05805 2.0kb upstream 2.0kb upstream 4921 true Chr1: 1742773-1747693 Arabidopsis thaliana
AT1G05805 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1742773-1744772 Arabidopsis thaliana
AT1G05805 2.0kb downstream 2.0kb downstream 4921 true Chr1: 1744773-1749693 Arabidopsis thaliana
AT1G05805 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1747694-1749693 Arabidopsis thaliana
AT1G05805 5.0kb upstream 5.0kb upstream 7921 true Chr1: 1739773-1747693 Arabidopsis thaliana
AT1G05805 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1739773-1744772 Arabidopsis thaliana
AT1G05805 5.0kb downstream 5.0kb downstream 7921 true Chr1: 1744773-1752693 Arabidopsis thaliana
AT1G05805 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1747694-1752693 Arabidopsis thaliana
AT1G05805 10.0kb upstream 10.0kb upstream 12921 true Chr1: 1734773-1747693 Arabidopsis thaliana
AT1G05805 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1734773-1744772 Arabidopsis thaliana
AT1G05805 10.0kb downstream 10.0kb downstream 12921 true Chr1: 1744773-1757693 Arabidopsis thaliana
AT1G05805 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1747694-1757693 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368052 5261 Brassicaceae View MSA
123833234 5264 Brassicales-Malvales View MSA
124343766 5266 SBM View MSA
124238014 5268 Malvidae View MSA
124061525 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.822       Low
cufflinks 18.523        
cufflinks 15.72        
cufflinks 18.564        
cufflinks 20.029       High
cufflinks 13.657       Low

0 Strain