Gene : AT1G05000 A. thaliana TAIR10
Defline:  (1 of 4) K18045 - tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] (SIW14, OCA3) Genomic Order:  421
Name:  ? AT1G05000 Secondary Identifier:  ? PAC:19657284
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05000 0.5kb upstream 0.5kb upstream 3690 true Chr1: 1425093-1428782 Arabidopsis thaliana
AT1G05000 0.5kb upstream 0.5kb upstream 500 false Chr1: 1425093-1425592 Arabidopsis thaliana
AT1G05000 0.5kb downstream 0.5kb downstream 3690 true Chr1: 1425593-1429282 Arabidopsis thaliana
AT1G05000 0.5kb downstream 0.5kb downstream 500 false Chr1: 1428783-1429282 Arabidopsis thaliana
AT1G05000 1.0kb upstream 1.0kb upstream 4190 true Chr1: 1424593-1428782 Arabidopsis thaliana
AT1G05000 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1424593-1425592 Arabidopsis thaliana
AT1G05000 1.0kb downstream 1.0kb downstream 4190 true Chr1: 1425593-1429782 Arabidopsis thaliana
AT1G05000 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1428783-1429782 Arabidopsis thaliana
AT1G05000 2.0kb upstream 2.0kb upstream 5190 true Chr1: 1423593-1428782 Arabidopsis thaliana
AT1G05000 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1423593-1425592 Arabidopsis thaliana
AT1G05000 2.0kb downstream 2.0kb downstream 5190 true Chr1: 1425593-1430782 Arabidopsis thaliana
AT1G05000 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1428783-1430782 Arabidopsis thaliana
AT1G05000 5.0kb upstream 5.0kb upstream 8190 true Chr1: 1420593-1428782 Arabidopsis thaliana
AT1G05000 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1420593-1425592 Arabidopsis thaliana
AT1G05000 5.0kb downstream 5.0kb downstream 8190 true Chr1: 1425593-1433782 Arabidopsis thaliana
AT1G05000 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1428783-1433782 Arabidopsis thaliana
AT1G05000 10.0kb upstream 10.0kb upstream 13190 true Chr1: 1415593-1428782 Arabidopsis thaliana
AT1G05000 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1415593-1425592 Arabidopsis thaliana
AT1G05000 10.0kb downstream 10.0kb downstream 13190 true Chr1: 1425593-1438782 Arabidopsis thaliana
AT1G05000 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1428783-1438782 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365985 5261 Brassicaceae View MSA
123837881 5264 Brassicales-Malvales View MSA
124346848 5266 SBM View MSA
124252278 5268 Malvidae View MSA
124073099 5270 Rosid View MSA
123742973 5271 Pentapetalae View MSA
122795531 5272 Eudicot View MSA
122050938 5273 Angiosperm View MSA
121344841 5274 Embryophyte View MSA
123380112 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.779        
cufflinks 2.076        
cufflinks 0.533       Low
cufflinks 2.763       High
cufflinks 0.917        
cufflinks 1.171        

0 Strain