Gene : AT1G04990 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12506//PTHR12506:SF24 - PROTEIN PHOSPHATASE RELATED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26-RELATED Genomic Order:  420
Name:  ? AT1G04990 Secondary Identifier:  ? PAC:19653127
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04990 0.5kb upstream 0.5kb upstream 3210 true Chr1: 1419080-1422289 Arabidopsis thaliana
AT1G04990 0.5kb upstream 0.5kb upstream 500 false Chr1: 1421790-1422289 Arabidopsis thaliana
AT1G04990 0.5kb downstream 0.5kb downstream 3210 true Chr1: 1418580-1421789 Arabidopsis thaliana
AT1G04990 0.5kb downstream 0.5kb downstream 500 false Chr1: 1418580-1419079 Arabidopsis thaliana
AT1G04990 1.0kb upstream 1.0kb upstream 3710 true Chr1: 1419080-1422789 Arabidopsis thaliana
AT1G04990 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1421790-1422789 Arabidopsis thaliana
AT1G04990 1.0kb downstream 1.0kb downstream 3710 true Chr1: 1418080-1421789 Arabidopsis thaliana
AT1G04990 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1418080-1419079 Arabidopsis thaliana
AT1G04990 2.0kb upstream 2.0kb upstream 4710 true Chr1: 1419080-1423789 Arabidopsis thaliana
AT1G04990 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1421790-1423789 Arabidopsis thaliana
AT1G04990 2.0kb downstream 2.0kb downstream 4710 true Chr1: 1417080-1421789 Arabidopsis thaliana
AT1G04990 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1417080-1419079 Arabidopsis thaliana
AT1G04990 5.0kb upstream 5.0kb upstream 7710 true Chr1: 1419080-1426789 Arabidopsis thaliana
AT1G04990 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1421790-1426789 Arabidopsis thaliana
AT1G04990 5.0kb downstream 5.0kb downstream 7710 true Chr1: 1414080-1421789 Arabidopsis thaliana
AT1G04990 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1414080-1419079 Arabidopsis thaliana
AT1G04990 10.0kb upstream 10.0kb upstream 12710 true Chr1: 1419080-1431789 Arabidopsis thaliana
AT1G04990 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1421790-1431789 Arabidopsis thaliana
AT1G04990 10.0kb downstream 10.0kb downstream 12710 true Chr1: 1409080-1421789 Arabidopsis thaliana
AT1G04990 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1409080-1419079 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362451 5261 Brassicaceae View MSA
123840275 5264 Brassicales-Malvales View MSA
124337037 5266 SBM View MSA
124252146 5268 Malvidae View MSA
124063144 5270 Rosid View MSA
123743724 5271 Pentapetalae View MSA
122789792 5272 Eudicot View MSA
122050864 5273 Angiosperm View MSA
121352088 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.062        
cufflinks 6.782       Low
cufflinks 12.936        
cufflinks 7.561        
cufflinks 14.998       High
cufflinks 7.269        

0 Strain