Gene : AT1G04960 A. thaliana TAIR10
Defline:  (1 of 6) PF07889 - Protein of unknown function (DUF1664) (DUF1664) Genomic Order:  416
Name:  ? AT1G04960 Secondary Identifier:  ? PAC:19654409
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04960 0.5kb upstream 0.5kb upstream 3568 true Chr1: 1407801-1411368 Arabidopsis thaliana
AT1G04960 0.5kb upstream 0.5kb upstream 500 false Chr1: 1410869-1411368 Arabidopsis thaliana
AT1G04960 0.5kb downstream 0.5kb downstream 3568 true Chr1: 1407301-1410868 Arabidopsis thaliana
AT1G04960 0.5kb downstream 0.5kb downstream 500 false Chr1: 1407301-1407800 Arabidopsis thaliana
AT1G04960 1.0kb upstream 1.0kb upstream 4068 true Chr1: 1407801-1411868 Arabidopsis thaliana
AT1G04960 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1410869-1411868 Arabidopsis thaliana
AT1G04960 1.0kb downstream 1.0kb downstream 4068 true Chr1: 1406801-1410868 Arabidopsis thaliana
AT1G04960 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1406801-1407800 Arabidopsis thaliana
AT1G04960 2.0kb upstream 2.0kb upstream 5068 true Chr1: 1407801-1412868 Arabidopsis thaliana
AT1G04960 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1410869-1412868 Arabidopsis thaliana
AT1G04960 2.0kb downstream 2.0kb downstream 5068 true Chr1: 1405801-1410868 Arabidopsis thaliana
AT1G04960 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1405801-1407800 Arabidopsis thaliana
AT1G04960 5.0kb upstream 5.0kb upstream 8068 true Chr1: 1407801-1415868 Arabidopsis thaliana
AT1G04960 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1410869-1415868 Arabidopsis thaliana
AT1G04960 5.0kb downstream 5.0kb downstream 8068 true Chr1: 1402801-1410868 Arabidopsis thaliana
AT1G04960 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1402801-1407800 Arabidopsis thaliana
AT1G04960 10.0kb upstream 10.0kb upstream 13068 true Chr1: 1407801-1420868 Arabidopsis thaliana
AT1G04960 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1410869-1420868 Arabidopsis thaliana
AT1G04960 10.0kb downstream 10.0kb downstream 13068 true Chr1: 1397801-1410868 Arabidopsis thaliana
AT1G04960 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1397801-1407800 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368492 5261 Brassicaceae View MSA
123831417 5264 Brassicales-Malvales View MSA
124345198 5266 SBM View MSA
124242835 5268 Malvidae View MSA
124066515 5270 Rosid View MSA
123745740 5271 Pentapetalae View MSA
122789386 5272 Eudicot View MSA
122050291 5273 Angiosperm View MSA
121350785 5274 Embryophyte View MSA
123428058 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.29        
cufflinks 4.294        
cufflinks 3.224       Low
cufflinks 4.117        
cufflinks 3.899        
cufflinks 4.492        

0 Strain