Gene : AT1G05140 A. thaliana TAIR10
Defline:  (1 of 3) 3.4.24.85 - S2P endopeptidase / Sterol-regulatory element-binding proteins intramembrane protease Genomic Order:  436
Name:  ? AT1G05140 Secondary Identifier:  ? PAC:19653901
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05140 0.5kb upstream 0.5kb upstream 2009 true Chr1: 1482048-1484056 Arabidopsis thaliana
AT1G05140 0.5kb upstream 0.5kb upstream 500 false Chr1: 1482048-1482547 Arabidopsis thaliana
AT1G05140 0.5kb downstream 0.5kb downstream 2009 true Chr1: 1482548-1484556 Arabidopsis thaliana
AT1G05140 0.5kb downstream 0.5kb downstream 500 false Chr1: 1484057-1484556 Arabidopsis thaliana
AT1G05140 1.0kb upstream 1.0kb upstream 2509 true Chr1: 1481548-1484056 Arabidopsis thaliana
AT1G05140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1481548-1482547 Arabidopsis thaliana
AT1G05140 1.0kb downstream 1.0kb downstream 2509 true Chr1: 1482548-1485056 Arabidopsis thaliana
AT1G05140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1484057-1485056 Arabidopsis thaliana
AT1G05140 2.0kb upstream 2.0kb upstream 3509 true Chr1: 1480548-1484056 Arabidopsis thaliana
AT1G05140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1480548-1482547 Arabidopsis thaliana
AT1G05140 2.0kb downstream 2.0kb downstream 3509 true Chr1: 1482548-1486056 Arabidopsis thaliana
AT1G05140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1484057-1486056 Arabidopsis thaliana
AT1G05140 5.0kb upstream 5.0kb upstream 6509 true Chr1: 1477548-1484056 Arabidopsis thaliana
AT1G05140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1477548-1482547 Arabidopsis thaliana
AT1G05140 5.0kb downstream 5.0kb downstream 6509 true Chr1: 1482548-1489056 Arabidopsis thaliana
AT1G05140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1484057-1489056 Arabidopsis thaliana
AT1G05140 10.0kb upstream 10.0kb upstream 11509 true Chr1: 1472548-1484056 Arabidopsis thaliana
AT1G05140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1472548-1482547 Arabidopsis thaliana
AT1G05140 10.0kb downstream 10.0kb downstream 11509 true Chr1: 1482548-1494056 Arabidopsis thaliana
AT1G05140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1484057-1494056 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361531 5261 Brassicaceae View MSA
123835925 5264 Brassicales-Malvales View MSA
124346146 5266 SBM View MSA
124246459 5268 Malvidae View MSA
124063019 5270 Rosid View MSA
123739273 5271 Pentapetalae View MSA
122788607 5272 Eudicot View MSA
122044779 5273 Angiosperm View MSA
121347975 5274 Embryophyte View MSA
123424345 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.004     High High
cufflinks 6.02        
cufflinks 44.171     High  
cufflinks 6.143        
cufflinks 33.677     High  
cufflinks 3.873       Low

0 Strain