Gene : AT1G04620 A. thaliana TAIR10
Defline:  (1 of 1) 1.17.7.2 - 7-hydroxymethyl chlorophyll a reductase Genomic Order:  378
Name:  ? AT1G04620 Secondary Identifier:  ? PAC:19653313
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5068 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04620 0.5kb upstream 0.5kb upstream 4344 true Chr1: 1282741-1287084 Arabidopsis thaliana
AT1G04620 0.5kb upstream 0.5kb upstream 500 false Chr1: 1286585-1287084 Arabidopsis thaliana
AT1G04620 0.5kb downstream 0.5kb downstream 4344 true Chr1: 1282241-1286584 Arabidopsis thaliana
AT1G04620 0.5kb downstream 0.5kb downstream 500 false Chr1: 1282241-1282740 Arabidopsis thaliana
AT1G04620 1.0kb upstream 1.0kb upstream 4844 true Chr1: 1282741-1287584 Arabidopsis thaliana
AT1G04620 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1286585-1287584 Arabidopsis thaliana
AT1G04620 1.0kb downstream 1.0kb downstream 4844 true Chr1: 1281741-1286584 Arabidopsis thaliana
AT1G04620 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1281741-1282740 Arabidopsis thaliana
AT1G04620 2.0kb upstream 2.0kb upstream 5844 true Chr1: 1282741-1288584 Arabidopsis thaliana
AT1G04620 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1286585-1288584 Arabidopsis thaliana
AT1G04620 2.0kb downstream 2.0kb downstream 5844 true Chr1: 1280741-1286584 Arabidopsis thaliana
AT1G04620 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1280741-1282740 Arabidopsis thaliana
AT1G04620 5.0kb upstream 5.0kb upstream 8844 true Chr1: 1282741-1291584 Arabidopsis thaliana
AT1G04620 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1286585-1291584 Arabidopsis thaliana
AT1G04620 5.0kb downstream 5.0kb downstream 8844 true Chr1: 1277741-1286584 Arabidopsis thaliana
AT1G04620 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1277741-1282740 Arabidopsis thaliana
AT1G04620 10.0kb upstream 10.0kb upstream 13844 true Chr1: 1282741-1296584 Arabidopsis thaliana
AT1G04620 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1286585-1296584 Arabidopsis thaliana
AT1G04620 10.0kb downstream 10.0kb downstream 13844 true Chr1: 1272741-1286584 Arabidopsis thaliana
AT1G04620 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1272741-1282740 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371719 5261 Brassicaceae View MSA
123830449 5264 Brassicales-Malvales View MSA
124343484 5266 SBM View MSA
124240416 5268 Malvidae View MSA
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.6       High
cufflinks 3.453        
cufflinks 13.532        
cufflinks 2.994        
cufflinks 9.291        
cufflinks 2.564       Low

0 Strain