Gene : AT1G04540 A. thaliana TAIR10
Defline:  (1 of 4) PTHR32246//PTHR32246:SF16 - FAMILY NOT NAMED // CALCIUM-DEPENDENT LIPID-BINDING DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  369
Name:  ? AT1G04540 Secondary Identifier:  ? PAC:19651798
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04540 0.5kb upstream 0.5kb upstream 2306 true Chr1: 1236756-1239061 Arabidopsis thaliana
AT1G04540 0.5kb upstream 0.5kb upstream 500 false Chr1: 1236756-1237255 Arabidopsis thaliana
AT1G04540 0.5kb downstream 0.5kb downstream 2306 true Chr1: 1237256-1239561 Arabidopsis thaliana
AT1G04540 0.5kb downstream 0.5kb downstream 500 false Chr1: 1239062-1239561 Arabidopsis thaliana
AT1G04540 1.0kb upstream 1.0kb upstream 2806 true Chr1: 1236256-1239061 Arabidopsis thaliana
AT1G04540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1236256-1237255 Arabidopsis thaliana
AT1G04540 1.0kb downstream 1.0kb downstream 2806 true Chr1: 1237256-1240061 Arabidopsis thaliana
AT1G04540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1239062-1240061 Arabidopsis thaliana
AT1G04540 2.0kb upstream 2.0kb upstream 3806 true Chr1: 1235256-1239061 Arabidopsis thaliana
AT1G04540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1235256-1237255 Arabidopsis thaliana
AT1G04540 2.0kb downstream 2.0kb downstream 3806 true Chr1: 1237256-1241061 Arabidopsis thaliana
AT1G04540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1239062-1241061 Arabidopsis thaliana
AT1G04540 5.0kb upstream 5.0kb upstream 6806 true Chr1: 1232256-1239061 Arabidopsis thaliana
AT1G04540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1232256-1237255 Arabidopsis thaliana
AT1G04540 5.0kb downstream 5.0kb downstream 6806 true Chr1: 1237256-1244061 Arabidopsis thaliana
AT1G04540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1239062-1244061 Arabidopsis thaliana
AT1G04540 10.0kb upstream 10.0kb upstream 11806 true Chr1: 1227256-1239061 Arabidopsis thaliana
AT1G04540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1227256-1237255 Arabidopsis thaliana
AT1G04540 10.0kb downstream 10.0kb downstream 11806 true Chr1: 1237256-1249061 Arabidopsis thaliana
AT1G04540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1239062-1249061 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364933 5261 Brassicaceae View MSA
123798863 5264 Brassicales-Malvales View MSA
124296443 5266 SBM View MSA
124253272 5268 Malvidae View MSA
124060581 5270 Rosid View MSA
123752777 5271 Pentapetalae View MSA
122787694 5272 Eudicot View MSA
122048299 5273 Angiosperm View MSA
121351739 5274 Embryophyte View MSA
123427392 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.063     Low  
cufflinks 0.092     Low  
cufflinks 0.039     Low Low
cufflinks 0.043     Low Low
cufflinks 0.082     Low  
cufflinks 0.109     Low High

0 Strain