Gene : IMS1 A. thaliana TAIR10
Primary Identifier:  ? AT1G74040 Defline:  (1 of 2) K01649 - 2-isopropylmalate synthase (leuA)
Genomic Order:  6369 Name:  ? AT1G74040
Secondary Identifier:  ? PAC:19651597
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana LEUSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G74040 0.5kb upstream 0.5kb upstream 4106 true Chr1: 27841671-27845776 Arabidopsis thaliana
AT1G74040 0.5kb upstream 0.5kb upstream 500 false Chr1: 27841671-27842170 Arabidopsis thaliana
AT1G74040 0.5kb downstream 0.5kb downstream 4106 true Chr1: 27842171-27846276 Arabidopsis thaliana
AT1G74040 0.5kb downstream 0.5kb downstream 500 false Chr1: 27845777-27846276 Arabidopsis thaliana
AT1G74040 1.0kb upstream 1.0kb upstream 4606 true Chr1: 27841171-27845776 Arabidopsis thaliana
AT1G74040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27841171-27842170 Arabidopsis thaliana
AT1G74040 1.0kb downstream 1.0kb downstream 4606 true Chr1: 27842171-27846776 Arabidopsis thaliana
AT1G74040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27845777-27846776 Arabidopsis thaliana
AT1G74040 2.0kb upstream 2.0kb upstream 5606 true Chr1: 27840171-27845776 Arabidopsis thaliana
AT1G74040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27840171-27842170 Arabidopsis thaliana
AT1G74040 2.0kb downstream 2.0kb downstream 5606 true Chr1: 27842171-27847776 Arabidopsis thaliana
AT1G74040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27845777-27847776 Arabidopsis thaliana
AT1G74040 5.0kb upstream 5.0kb upstream 8606 true Chr1: 27837171-27845776 Arabidopsis thaliana
AT1G74040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27837171-27842170 Arabidopsis thaliana
AT1G74040 5.0kb downstream 5.0kb downstream 8606 true Chr1: 27842171-27850776 Arabidopsis thaliana
AT1G74040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27845777-27850776 Arabidopsis thaliana
AT1G74040 10.0kb upstream 10.0kb upstream 13606 true Chr1: 27832171-27845776 Arabidopsis thaliana
AT1G74040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27832171-27842170 Arabidopsis thaliana
AT1G74040 10.0kb downstream 10.0kb downstream 13606 true Chr1: 27842171-27855776 Arabidopsis thaliana
AT1G74040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27845777-27855776 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376222 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.515        
cufflinks 5.775       Low
cufflinks 14.775       High
cufflinks 6.294        
cufflinks 13.158        
cufflinks 6.616        

0 Strain