Gene : VPS46.2 A. thaliana TAIR10
Primary Identifier:  ? AT1G73030 Defline:  (1 of 2) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2)
Genomic Order:  6261 Name:  ? AT1G73030
Secondary Identifier:  ? PAC:19651823
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G73030 0.5kb upstream 0.5kb upstream 1797 true Chr1: 27473326-27475122 Arabidopsis thaliana
AT1G73030 0.5kb upstream 0.5kb upstream 500 false Chr1: 27473326-27473825 Arabidopsis thaliana
AT1G73030 0.5kb downstream 0.5kb downstream 1797 true Chr1: 27473826-27475622 Arabidopsis thaliana
AT1G73030 0.5kb downstream 0.5kb downstream 500 false Chr1: 27475123-27475622 Arabidopsis thaliana
AT1G73030 1.0kb upstream 1.0kb upstream 2297 true Chr1: 27472826-27475122 Arabidopsis thaliana
AT1G73030 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27472826-27473825 Arabidopsis thaliana
AT1G73030 1.0kb downstream 1.0kb downstream 2297 true Chr1: 27473826-27476122 Arabidopsis thaliana
AT1G73030 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27475123-27476122 Arabidopsis thaliana
AT1G73030 2.0kb upstream 2.0kb upstream 3297 true Chr1: 27471826-27475122 Arabidopsis thaliana
AT1G73030 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27471826-27473825 Arabidopsis thaliana
AT1G73030 2.0kb downstream 2.0kb downstream 3297 true Chr1: 27473826-27477122 Arabidopsis thaliana
AT1G73030 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27475123-27477122 Arabidopsis thaliana
AT1G73030 5.0kb upstream 5.0kb upstream 6297 true Chr1: 27468826-27475122 Arabidopsis thaliana
AT1G73030 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27468826-27473825 Arabidopsis thaliana
AT1G73030 5.0kb downstream 5.0kb downstream 6297 true Chr1: 27473826-27480122 Arabidopsis thaliana
AT1G73030 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27475123-27480122 Arabidopsis thaliana
AT1G73030 10.0kb upstream 10.0kb upstream 11297 true Chr1: 27463826-27475122 Arabidopsis thaliana
AT1G73030 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27463826-27473825 Arabidopsis thaliana
AT1G73030 10.0kb downstream 10.0kb downstream 11297 true Chr1: 27473826-27485122 Arabidopsis thaliana
AT1G73030 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27475123-27485122 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378234 5261 Brassicaceae View MSA
123831095 5264 Brassicales-Malvales View MSA
124341950 5266 SBM View MSA
124253428 5268 Malvidae View MSA
124063895 5270 Rosid View MSA
123748216 5271 Pentapetalae View MSA
122794716 5272 Eudicot View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 85.041     High  
cufflinks 120.774     High High
cufflinks 74.01     High Low
cufflinks 107.615     High  
cufflinks 86.269     High  
cufflinks 106.386     High  

0 Strain