Gene : AT1G72520 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11771//PTHR11771:SF38 - LIPOXYGENASE // LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  6210
Name:  ? AT1G72520 Secondary Identifier:  ? PAC:19657873
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5409 Arabidopsis thaliana pathologic  
Athaliana PWY-5410 Arabidopsis thaliana pathologic  
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G72520 0.5kb upstream 0.5kb upstream 4740 true Chr1: 27308015-27312754 Arabidopsis thaliana
AT1G72520 0.5kb upstream 0.5kb upstream 500 false Chr1: 27308015-27308514 Arabidopsis thaliana
AT1G72520 0.5kb downstream 0.5kb downstream 4740 true Chr1: 27308515-27313254 Arabidopsis thaliana
AT1G72520 0.5kb downstream 0.5kb downstream 500 false Chr1: 27312755-27313254 Arabidopsis thaliana
AT1G72520 1.0kb upstream 1.0kb upstream 5240 true Chr1: 27307515-27312754 Arabidopsis thaliana
AT1G72520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27307515-27308514 Arabidopsis thaliana
AT1G72520 1.0kb downstream 1.0kb downstream 5240 true Chr1: 27308515-27313754 Arabidopsis thaliana
AT1G72520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27312755-27313754 Arabidopsis thaliana
AT1G72520 2.0kb upstream 2.0kb upstream 6240 true Chr1: 27306515-27312754 Arabidopsis thaliana
AT1G72520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27306515-27308514 Arabidopsis thaliana
AT1G72520 2.0kb downstream 2.0kb downstream 6240 true Chr1: 27308515-27314754 Arabidopsis thaliana
AT1G72520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27312755-27314754 Arabidopsis thaliana
AT1G72520 5.0kb upstream 5.0kb upstream 9240 true Chr1: 27303515-27312754 Arabidopsis thaliana
AT1G72520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27303515-27308514 Arabidopsis thaliana
AT1G72520 5.0kb downstream 5.0kb downstream 9240 true Chr1: 27308515-27317754 Arabidopsis thaliana
AT1G72520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27312755-27317754 Arabidopsis thaliana
AT1G72520 10.0kb upstream 10.0kb upstream 14240 true Chr1: 27298515-27312754 Arabidopsis thaliana
AT1G72520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27298515-27308514 Arabidopsis thaliana
AT1G72520 10.0kb downstream 10.0kb downstream 14240 true Chr1: 27308515-27322754 Arabidopsis thaliana
AT1G72520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27312755-27322754 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371456 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.274       Low
cufflinks 102.712     High High
cufflinks 44.647     High  
cufflinks 64.68     High  
cufflinks 24.233       Low
cufflinks 56.956     High  

0 Strain