Gene : AT1G72080 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23338:SF17 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 Genomic Order:  6164
Name:  ? AT1G72080 Secondary Identifier:  ? PAC:19656007
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G72080 0.5kb upstream 0.5kb upstream 2998 true Chr1: 27120264-27123261 Arabidopsis thaliana
AT1G72080 0.5kb upstream 0.5kb upstream 500 false Chr1: 27122762-27123261 Arabidopsis thaliana
AT1G72080 0.5kb downstream 0.5kb downstream 2998 true Chr1: 27119764-27122761 Arabidopsis thaliana
AT1G72080 0.5kb downstream 0.5kb downstream 500 false Chr1: 27119764-27120263 Arabidopsis thaliana
AT1G72080 1.0kb upstream 1.0kb upstream 3498 true Chr1: 27120264-27123761 Arabidopsis thaliana
AT1G72080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27122762-27123761 Arabidopsis thaliana
AT1G72080 1.0kb downstream 1.0kb downstream 3498 true Chr1: 27119264-27122761 Arabidopsis thaliana
AT1G72080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27119264-27120263 Arabidopsis thaliana
AT1G72080 2.0kb upstream 2.0kb upstream 4498 true Chr1: 27120264-27124761 Arabidopsis thaliana
AT1G72080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27122762-27124761 Arabidopsis thaliana
AT1G72080 2.0kb downstream 2.0kb downstream 4498 true Chr1: 27118264-27122761 Arabidopsis thaliana
AT1G72080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27118264-27120263 Arabidopsis thaliana
AT1G72080 5.0kb upstream 5.0kb upstream 7498 true Chr1: 27120264-27127761 Arabidopsis thaliana
AT1G72080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27122762-27127761 Arabidopsis thaliana
AT1G72080 5.0kb downstream 5.0kb downstream 7498 true Chr1: 27115264-27122761 Arabidopsis thaliana
AT1G72080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27115264-27120263 Arabidopsis thaliana
AT1G72080 10.0kb upstream 10.0kb upstream 12498 true Chr1: 27120264-27132761 Arabidopsis thaliana
AT1G72080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27122762-27132761 Arabidopsis thaliana
AT1G72080 10.0kb downstream 10.0kb downstream 12498 true Chr1: 27110264-27122761 Arabidopsis thaliana
AT1G72080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27110264-27120263 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121492559 5273 Angiosperm View MSA
122327391 5261 Brassicaceae View MSA
123768824 5264 Brassicales-Malvales View MSA
124267405 5266 SBM View MSA
124123730 5268 Malvidae View MSA
123852844 5270 Rosid View MSA
123438960 5271 Pentapetalae View MSA
122474560 5272 Eudicot View MSA
120765937 5274 Embryophyte View MSA
122808351 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain