Gene : AT1G71340 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  6099
Name:  ? AT1G71340 Secondary Identifier:  ? PAC:19657166
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7409 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G71340 0.5kb upstream 0.5kb upstream 3669 true Chr1: 26885170-26888838 Arabidopsis thaliana
AT1G71340 0.5kb upstream 0.5kb upstream 500 false Chr1: 26888339-26888838 Arabidopsis thaliana
AT1G71340 0.5kb downstream 0.5kb downstream 3669 true Chr1: 26884670-26888338 Arabidopsis thaliana
AT1G71340 0.5kb downstream 0.5kb downstream 500 false Chr1: 26884670-26885169 Arabidopsis thaliana
AT1G71340 1.0kb upstream 1.0kb upstream 4169 true Chr1: 26885170-26889338 Arabidopsis thaliana
AT1G71340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26888339-26889338 Arabidopsis thaliana
AT1G71340 1.0kb downstream 1.0kb downstream 4169 true Chr1: 26884170-26888338 Arabidopsis thaliana
AT1G71340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26884170-26885169 Arabidopsis thaliana
AT1G71340 2.0kb upstream 2.0kb upstream 5169 true Chr1: 26885170-26890338 Arabidopsis thaliana
AT1G71340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26888339-26890338 Arabidopsis thaliana
AT1G71340 2.0kb downstream 2.0kb downstream 5169 true Chr1: 26883170-26888338 Arabidopsis thaliana
AT1G71340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26883170-26885169 Arabidopsis thaliana
AT1G71340 5.0kb upstream 5.0kb upstream 8169 true Chr1: 26885170-26893338 Arabidopsis thaliana
AT1G71340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26888339-26893338 Arabidopsis thaliana
AT1G71340 5.0kb downstream 5.0kb downstream 8169 true Chr1: 26880170-26888338 Arabidopsis thaliana
AT1G71340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26880170-26885169 Arabidopsis thaliana
AT1G71340 10.0kb upstream 10.0kb upstream 13169 true Chr1: 26885170-26898338 Arabidopsis thaliana
AT1G71340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26888339-26898338 Arabidopsis thaliana
AT1G71340 10.0kb downstream 10.0kb downstream 13169 true Chr1: 26875170-26888338 Arabidopsis thaliana
AT1G71340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26875170-26885169 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367757 5261 Brassicaceae View MSA
123834207 5264 Brassicales-Malvales View MSA
124341346 5266 SBM View MSA
124240087 5268 Malvidae View MSA
124067594 5270 Rosid View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.544       Low
cufflinks 17.708       High
cufflinks 8.193        
cufflinks 17.752       High
cufflinks 9.489        
cufflinks 12.458        

0 Strain