Gene : POK A. thaliana TAIR10
Primary Identifier:  ? AT1G71270 Defline:  (1 of 2) PTHR14190:SF7 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 52 HOMOLOG
Genomic Order:  6092 Name:  ? AT1G71270
Secondary Identifier:  ? PAC:19651643
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G71270 0.5kb upstream 0.5kb upstream 6929 true Chr1: 26863087-26870015 Arabidopsis thaliana
AT1G71270 0.5kb upstream 0.5kb upstream 500 false Chr1: 26863087-26863586 Arabidopsis thaliana
AT1G71270 0.5kb downstream 0.5kb downstream 6929 true Chr1: 26863587-26870515 Arabidopsis thaliana
AT1G71270 0.5kb downstream 0.5kb downstream 500 false Chr1: 26870016-26870515 Arabidopsis thaliana
AT1G71270 1.0kb upstream 1.0kb upstream 7429 true Chr1: 26862587-26870015 Arabidopsis thaliana
AT1G71270 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26862587-26863586 Arabidopsis thaliana
AT1G71270 1.0kb downstream 1.0kb downstream 7429 true Chr1: 26863587-26871015 Arabidopsis thaliana
AT1G71270 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26870016-26871015 Arabidopsis thaliana
AT1G71270 2.0kb upstream 2.0kb upstream 8429 true Chr1: 26861587-26870015 Arabidopsis thaliana
AT1G71270 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26861587-26863586 Arabidopsis thaliana
AT1G71270 2.0kb downstream 2.0kb downstream 8429 true Chr1: 26863587-26872015 Arabidopsis thaliana
AT1G71270 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26870016-26872015 Arabidopsis thaliana
AT1G71270 5.0kb upstream 5.0kb upstream 11429 true Chr1: 26858587-26870015 Arabidopsis thaliana
AT1G71270 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26858587-26863586 Arabidopsis thaliana
AT1G71270 5.0kb downstream 5.0kb downstream 11429 true Chr1: 26863587-26875015 Arabidopsis thaliana
AT1G71270 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26870016-26875015 Arabidopsis thaliana
AT1G71270 10.0kb upstream 10.0kb upstream 16429 true Chr1: 26853587-26870015 Arabidopsis thaliana
AT1G71270 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26853587-26863586 Arabidopsis thaliana
AT1G71270 10.0kb downstream 10.0kb downstream 16429 true Chr1: 26863587-26880015 Arabidopsis thaliana
AT1G71270 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26870016-26880015 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367940 5261 Brassicaceae View MSA
123831276 5264 Brassicales-Malvales View MSA
124345712 5266 SBM View MSA
124239789 5268 Malvidae View MSA
124065275 5270 Rosid View MSA
123738224 5271 Pentapetalae View MSA
122792330 5272 Eudicot View MSA
122043794 5273 Angiosperm View MSA
121345189 5274 Embryophyte View MSA
123425999 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.242        
cufflinks 9.272        
cufflinks 6.727       Low
cufflinks 9.882        
cufflinks 6.79       Low
cufflinks 10.702       High

0 Strain