Gene : AT1G71200 A. thaliana TAIR10
Defline:  (1 of 5) PTHR13935:SF41 - ACHAETE-SCUTE HOMOLOG 3 Genomic Order:  6084
Name:  ? AT1G71200 Secondary Identifier:  ? PAC:19655591
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G71200 0.5kb upstream 0.5kb upstream 1836 true Chr1: 26835973-26837808 Arabidopsis thaliana
AT1G71200 0.5kb upstream 0.5kb upstream 500 false Chr1: 26837309-26837808 Arabidopsis thaliana
AT1G71200 0.5kb downstream 0.5kb downstream 1836 true Chr1: 26835473-26837308 Arabidopsis thaliana
AT1G71200 0.5kb downstream 0.5kb downstream 500 false Chr1: 26835473-26835972 Arabidopsis thaliana
AT1G71200 1.0kb upstream 1.0kb upstream 2336 true Chr1: 26835973-26838308 Arabidopsis thaliana
AT1G71200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26837309-26838308 Arabidopsis thaliana
AT1G71200 1.0kb downstream 1.0kb downstream 2336 true Chr1: 26834973-26837308 Arabidopsis thaliana
AT1G71200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26834973-26835972 Arabidopsis thaliana
AT1G71200 2.0kb upstream 2.0kb upstream 3336 true Chr1: 26835973-26839308 Arabidopsis thaliana
AT1G71200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26837309-26839308 Arabidopsis thaliana
AT1G71200 2.0kb downstream 2.0kb downstream 3336 true Chr1: 26833973-26837308 Arabidopsis thaliana
AT1G71200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26833973-26835972 Arabidopsis thaliana
AT1G71200 5.0kb upstream 5.0kb upstream 6336 true Chr1: 26835973-26842308 Arabidopsis thaliana
AT1G71200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26837309-26842308 Arabidopsis thaliana
AT1G71200 5.0kb downstream 5.0kb downstream 6336 true Chr1: 26830973-26837308 Arabidopsis thaliana
AT1G71200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26830973-26835972 Arabidopsis thaliana
AT1G71200 10.0kb upstream 10.0kb upstream 11336 true Chr1: 26835973-26847308 Arabidopsis thaliana
AT1G71200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26837309-26847308 Arabidopsis thaliana
AT1G71200 10.0kb downstream 10.0kb downstream 11336 true Chr1: 26825973-26837308 Arabidopsis thaliana
AT1G71200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26825973-26835972 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361399 5261 Brassicaceae View MSA
123798156 5264 Brassicales-Malvales View MSA
124349847 5266 SBM View MSA
124254233 5268 Malvidae View MSA
124071325 5270 Rosid View MSA
123751421 5271 Pentapetalae View MSA
122790904 5272 Eudicot View MSA
122049440 5273 Angiosperm View MSA
121311403 5274 Embryophyte View MSA
123348704 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.16     Low  
cufflinks 0.011     Low Low
cufflinks 0.191     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.109     Low  

0 Strain