Gene : SYNC3 A. thaliana TAIR10
Primary Identifier:  ? AT1G70980 Defline:  (1 of 4) K01893 - asparaginyl-tRNA synthetase (NARS, asnS)
Genomic Order:  6060 Name:  ? AT1G70980
Secondary Identifier:  ? PAC:19653252
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G70980 0.5kb upstream 0.5kb upstream 2785 true Chr1: 26761839-26764623 Arabidopsis thaliana
AT1G70980 0.5kb upstream 0.5kb upstream 500 false Chr1: 26761839-26762338 Arabidopsis thaliana
AT1G70980 0.5kb downstream 0.5kb downstream 2785 true Chr1: 26762339-26765123 Arabidopsis thaliana
AT1G70980 0.5kb downstream 0.5kb downstream 500 false Chr1: 26764624-26765123 Arabidopsis thaliana
AT1G70980 1.0kb upstream 1.0kb upstream 3285 true Chr1: 26761339-26764623 Arabidopsis thaliana
AT1G70980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26761339-26762338 Arabidopsis thaliana
AT1G70980 1.0kb downstream 1.0kb downstream 3285 true Chr1: 26762339-26765623 Arabidopsis thaliana
AT1G70980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26764624-26765623 Arabidopsis thaliana
AT1G70980 2.0kb upstream 2.0kb upstream 4285 true Chr1: 26760339-26764623 Arabidopsis thaliana
AT1G70980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26760339-26762338 Arabidopsis thaliana
AT1G70980 2.0kb downstream 2.0kb downstream 4285 true Chr1: 26762339-26766623 Arabidopsis thaliana
AT1G70980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26764624-26766623 Arabidopsis thaliana
AT1G70980 5.0kb upstream 5.0kb upstream 7285 true Chr1: 26757339-26764623 Arabidopsis thaliana
AT1G70980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26757339-26762338 Arabidopsis thaliana
AT1G70980 5.0kb downstream 5.0kb downstream 7285 true Chr1: 26762339-26769623 Arabidopsis thaliana
AT1G70980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26764624-26769623 Arabidopsis thaliana
AT1G70980 10.0kb upstream 10.0kb upstream 12285 true Chr1: 26752339-26764623 Arabidopsis thaliana
AT1G70980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26752339-26762338 Arabidopsis thaliana
AT1G70980 10.0kb downstream 10.0kb downstream 12285 true Chr1: 26762339-26774623 Arabidopsis thaliana
AT1G70980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26764624-26774623 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328655 5261 Brassicaceae Singleton cluster - no MSA
123769997 5264 Brassicales-Malvales Singleton cluster - no MSA
124268547 5266 SBM Singleton cluster - no MSA
124124743 5268 Malvidae Singleton cluster - no MSA
123853751 5270 Rosid Singleton cluster - no MSA
123439809 5271 Pentapetalae Singleton cluster - no MSA
122475399 5272 Eudicot Singleton cluster - no MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.712       Low
cufflinks 19.953        
cufflinks 12.693       Low
cufflinks 20.798       High
cufflinks 15.762        
cufflinks 17.621        

0 Strain